Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H09
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    29   1.8  
AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical...    29   1.8  
U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family prot...    29   3.2  
Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical p...    27   9.8  
U68254-1|AAB16969.1|   67|Caenorhabditis elegans rab6-like protein.    27   9.8  

>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNTGV 270
           + D G  K+++    SS  ++ +++ S++++ PP   SC Q   +D   V
Sbjct: 428 AGDQGTTKSDSKPGTSSEPSTTTSVTSSILQGPPATSSCHQELSMDGLRV 477


>AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical
           protein Y73F8A.11 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 318 SAWNNMHQSITTWYPAYSCVIQVCTLLATLRIRWYFNHSTLNCTNRCIH 172
           S W ++   +T W  A++ V  V   L T   + +F +S ++   R IH
Sbjct: 27  SIWKSVRWELTMWVIAFAVVQMVYRYLMTEDQQKFFEYSAIHLNVRLIH 75


>U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family protein
           6.2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 85  FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 195
           FG+P+K FK  F  +  + KT+  T F + S  NT  +TI
Sbjct: 4   FGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43


>Z68008-1|CAA92002.1|  154|Caenorhabditis elegans Hypothetical
           protein R08B4.3 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 297 QSITTWYPAYSCVIQVCTLLATLRIRWYF 211
           QS  TWYP Y   I +C    +  + WYF
Sbjct: 90  QSHATWYPGYKWTICLCK-SCSRHMGWYF 117


>Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 215 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 48
           +S+  L ++ TD+ I L  +  +  F P  + N+    F    PN+  M+  C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335


>Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 215 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 48
           +S+  L ++ TD+ I L  +  +  F P  + N+    F    PN+  M+  C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335


>U68254-1|AAB16969.1|   67|Caenorhabditis elegans rab6-like protein.
          Length = 67

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 85  FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 195
           FG+P+K F+  F  +  + KT+  T F + S  NT  +TI
Sbjct: 4   FGNPLKKFELVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,488
Number of Sequences: 27780
Number of extensions: 233617
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)