Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H08
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    31   0.68 
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   3.6  
04_02_0006 + 8455219-8457469,8457560-8457924                           29   3.6  
12_02_0412 - 18799217-18801061                                         28   6.3  
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    28   6.3  
05_04_0113 + 18085705-18085833,18086442-18086885                       28   8.4  
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105...    28   8.4  

>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = -1

Query: 371 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 192
           +PG    V  +P P  LSSA  A AA S+  L  S  P A       P     +P P++P
Sbjct: 17  SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70

Query: 191 SELSVRAPCAS 159
           S  S  A  +S
Sbjct: 71  SSSSAAAAGSS 81


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 412 HNDYHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIG 537
           +ND H   A++    N P +A   N N   G ++Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 404 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 231
           F  P +V+L  N G+C ++ +   P   SS  PA    +  LL+K    I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 513 VYSATDSVEVGYISDIWHISGGESLRCDVV 424
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -1

Query: 359 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 186
           C S  L   P ++ SA   +  P+ C L+    P     F  L A+G    P PE     
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522

Query: 185 LSVRAPCASLR 153
             +RA CA ++
Sbjct: 523 AQLRADCAKVQ 533


>05_04_0113 + 18085705-18085833,18086442-18086885
          Length = 190

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = +1

Query: 121 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 273
           E+    TS+R R    G LT+ ++       G  GAG ++P AG D    +  G   +  
Sbjct: 30  EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89

Query: 274 TNRQKLGAATAGVALD 321
           ++   + AA+AG+  D
Sbjct: 90  SSLAAMVAASAGIQPD 105


>02_03_0247 -
           16809742-16809780,16810070-16810298,16810381-16810551,
           16810630-16811516,16811604-16812050,16812129-16812836
          Length = 826

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = -1

Query: 359 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 186
           C S  L   P ++ SA   +  P+ C L     P     F  L A+G    P PE     
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420

Query: 185 LSVRAPCASLR 153
             +RA CA ++
Sbjct: 421 AQLRADCAKVQ 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,310,618
Number of Sequences: 37544
Number of extensions: 428862
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)