Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H03
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.1  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.5  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    24   9.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.9  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.9  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 95  HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKALNFIKQLL 274
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 275 MKFTSSSCNLKQ 310
           +K  SS  +  Q
Sbjct: 193 VKPYSSQKDYTQ 204


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 440 IFVKIQKLWIIVPIKLW*EICQLFLDDFRFLNISIMHNIL 321
           + +K+     +VPIK W    QL L D   L   +++NI+
Sbjct: 1   MLLKVSSCEPLVPIKQWIHTSQLDLSDSSSLVADLLYNII 40


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 452 FYFYIFVKIQKLWI 411
           +Y YI VK++K WI
Sbjct: 78  YYLYISVKVRKAWI 91


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 128 ISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDI 229
           + +  TC    +  +K +  +GW  + QHG PD+
Sbjct: 164 VLIGVTCILLSFLVYKMNKAFGWIMYQQHG-PDL 196


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 313  MFIRILCIILMFKKRKSSRNSW 378
            +F+ +  I+LMF  RKS  +SW
Sbjct: 2189 LFLSMWIIMLMFLGRKSLTHSW 2210


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 ILCIILMFKKRKSSRNSWQISYHNFIGTIIQSFCI 429
           ILC+ +M ++R+S     +   HN+ G I  S  +
Sbjct: 52  ILCLTIMCEQRRSWTEMEEKLLHNYQGKIPDSIVV 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,808
Number of Sequences: 5004
Number of extensions: 37459
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)