Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H03
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0149 + 989698-991797                                             31   0.46 
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    30   1.1  
03_02_0583 + 9635002-9637299                                           29   1.8  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    27   5.6  
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795...    27   5.6  
05_01_0147 - 981697-983739                                             27   9.8  

>05_01_0149 + 989698-991797
          Length = 699

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 42  RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 143
           RS TNTG  P   + R+ T +V  + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 26  DYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 133
           D+ ++Q+ D+    +G+ P K C+VTC N+ +T+DI+
Sbjct: 137 DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 42  RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 143
           R+ TNT   P   L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 212 VDSDFSIRTKRQTCGVCKSSLRT 144
           V +  ++ T+ QTCG  K SLRT
Sbjct: 82  VATPHTVETQHQTCGAVKQSLRT 104


>05_03_0065 -
           7953414-7953845,7953963-7954081,7954158-7955990,
           7957103-7957559
          Length = 946

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 5   VNKNGSRDYG--LFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKIYKRHKF 178
           V  +G R  G  +F++ D+Y    G       HV   Q++TD+ SV  T A  +  +   
Sbjct: 450 VECSGDRKDGKYIFELVDRYIEEIGEQ-----HVV--QVVTDNASVNTTAASLLTAKRPS 502

Query: 179 DAWYGWKNHC 208
             W G+  HC
Sbjct: 503 IFWNGYAAHC 512


>05_01_0147 - 981697-983739
          Length = 680

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 42  RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 143
           R+ TNT   P   + R+ T +V  + L T+ W+L
Sbjct: 382 RAFTNTRRMPELFVMRLGTIMVTGFILATIFWRL 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,410
Number of Sequences: 37544
Number of extensions: 212805
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)