Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H03
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    27   5.0  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 2    KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC 106
            KV  NG  D G  +I ++Y C  G    +D  V C
Sbjct: 902  KVLPNGRPDVGSLKIKEEYLCQAGQVVVRDLCVPC 936


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 17  GSRDYGLFQINDKYWCSTGSTPGKDCHVT--CNQLLTDDISVAATCAKKIYKRHK 175
           GS   G +QI   Y+   G    K    T    +   DD++ A TC +  Y R+K
Sbjct: 41  GSLSCGYYQIKIGYYEDCGQPTKKAGETTEAAWKRCADDLNCATTCVENYYNRYK 95


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 17  GSRDYGLFQINDKYWCSTGSTPGKDCHVT--CNQLLTDDISVAATCAKKIYKRHK 175
           GS   G +QI   Y+   G    K    T    +   +D+S A TC +  Y R+K
Sbjct: 41  GSLSCGYYQIKLPYYEDCGQPTKKSGETTEAAWKRCANDLSCATTCVENYYNRYK 95


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 327 YPYKHFCFKLQLELVNFIRSCFMKFKAFSQQSL 229
           YP  HFC  +++  + F+ +CF    A S  SL
Sbjct: 62  YPTAHFCQMVKVSYLVFVSACFNFILAVSVNSL 94


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 17  GSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLL----TDDISVAATCAKKIYKRHKFD 181
           GS   G +QI   Y+   G  PGK  H    ++      DD+  A  C +  Y R+K +
Sbjct: 41  GSLSCGYYQIKIPYYEDCGQ-PGKK-HGESTEVAWKRCADDLKCATNCVENYYNRYKHE 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,412
Number of Sequences: 27780
Number of extensions: 208211
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)