Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H02
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 106 FFKELEGVGQRVRDAIISAGPAIDVLQKAKD-IADGRDSNEE 228
           F  +  G  + V D +IS G  ID+LQK KD + D R S+ E
Sbjct: 630 FLSDERGFNEHV-DKLIS-GQQIDILQKVKDALIDARPSSAE 669


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 106 FFKELEGVGQRVRDAIISAGPAIDVLQKAKD-IADGRDSNEE 228
           F  +  G  + V D +IS G  ID+LQK KD + D R S+ E
Sbjct: 715 FLSDERGFNEHV-DKLIS-GQQIDILQKVKDALIDARPSSAE 754


>Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical
           protein D2030.3 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +3

Query: 369 VYINLILIKSMKVNNGHEYVIFRLVINCKKKPCHTS 476
           +Y   +L+++ +    H  ++F++++NC      TS
Sbjct: 82  LYTRELLVRNPQAGELHSPIVFKIILNCMDAAAQTS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,264
Number of Sequences: 27780
Number of extensions: 197047
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)