Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_H01
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   1.6  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    23   6.4  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    23   6.4  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    23   8.5  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 110 LFIHIMALKLYKIDASPPARAAMMAFDILNLPVEMVDVNL 229
           L I  + L+   +   P A A+ +   ILNLP E+  ++L
Sbjct: 180 LTIPSLGLEDISMQVVPNAFASTLPLSILNLPAEVTPIDL 219


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 101 RFKLFIHIMALKLYKIDASP 160
           +FKL + +++L + KID  P
Sbjct: 746 KFKLILQLLSLLMVKIDVLP 765


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 246 KCSFSSRLTSTISTGRFNISKAIMAARAGGLASIL 142
           KC   + +   ++TG FN++    A +  G+A++L
Sbjct: 635 KCPNETAIIGFVTTGNFNLN----AGKPSGIANVL 665


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 218 QPFPREDLIYQKPSWQHV 165
           QPF R  L+ Q PS Q++
Sbjct: 9   QPFVRSPLVDQNPSIQNI 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,927
Number of Sequences: 5004
Number of extensions: 16915
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)