Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G24
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    34   0.053
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    29   2.0  
U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    27   4.6  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    27   6.1  

>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 33.9 bits (74), Expect = 0.053
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 13  TRLSTIQVKIPESIVIKKTPPIIKSIRNY*IKVIRKLPYKFYIATLCCSYLKV*FLYRLL 192
           TR  TI    PE++      PI + +++  +K I  + YK YI       L + F+ R++
Sbjct: 502 TRFMTIGDPFPENVTSFDEDPIYQIMKSQVLKFISNIKYKIYILD-AIPRLNIEFIERIV 560

Query: 193 MVYWYG 210
            + W G
Sbjct: 561 PMMWRG 566


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 102 LIIPYRFNYWGSFFYNNRFWNFDLNRAQSRAAR 4
           L +P  FN +G+F      WN D+++   R +R
Sbjct: 87  LSVPDSFNNFGTFRVQMNAWNLDISKMDERISR 119


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 85  SIRNY*IKVIRKLPYKFYIATLCCSYLKV*FLYRLLMVYWYG--FFFHNYEILSFSFTFL 258
           SIR++  K  RKL  KF  + L    + V F+       W+   F ++N  + + S    
Sbjct: 241 SIRSFTSKTTRKLQIKFLASILLQISIPVLFMLPTAFYIWFAVDFNYYNQALTNLSILHA 300

Query: 259 NEMGSKK*LNSMERHAASRSLIMSLFMVTK 348
           +  G    +  +  H   R  ++S F  +K
Sbjct: 301 SIHGLISTVAVLIIHHPYRQFVLSYFWKSK 330


>U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical
           protein W05H7.2 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 157 SYLKV*FLYRLLMVYWYGFFFHNYEILSFSFTFLNEMGSKK 279
           S  K+ F + L  + ++ FFFH+Y +       +NE    K
Sbjct: 16  SLAKILFNFFLHFLQFFSFFFHDYRLFCIKIEKINEKDPSK 56


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +1

Query: 85  SIRNY*IKVIRKLPYKFYIATLCCSYLKV*FLYRLLMVYWYG--FFFHNYEILSFSFTFL 258
           SIR++  K  RKL  KF  + L    + V F+       W+   F ++N  + + S    
Sbjct: 241 SIRSFTSKTTRKLQIKFLASILLQISIPVLFMLPTAFYIWFAVDFNYYNQALTNLSILHS 300

Query: 259 NEMGSKK*LNSMERHAASRSLIMSLF 336
           +  G       +  H   R  ++S F
Sbjct: 301 SIHGLISTFTVLIIHYPYRQFVLSYF 326


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +1

Query: 10  RTRLSTIQVKIPESIVIKKTPPIIKSIRNY*IKVIRKLPYKFYIATLCCSY-LKV*FLYR 186
           R   ST+ + I  S+V    P +IKSI    +++   L Y  +  ++  S+ + + + Y 
Sbjct: 150 RILFSTVAICI--SLVYGSKPSLIKSIV---LQLSLYLDYCCHFFSIAISFVITLNYFYY 204

Query: 187 LLMVYWYG--FFFHNYEILSFSFTF 255
                W+   F FH + +L F+F F
Sbjct: 205 CTFRNWHSRNFKFHKFGVLIFTFLF 229


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 138 IKLVWQFTYDFYLIIPYRFNY 76
           I L+W+  Y F+L +P R N+
Sbjct: 234 ISLIWRSKYSFFLSLPARTNF 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,381
Number of Sequences: 27780
Number of extensions: 150299
Number of successful extensions: 307
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)