Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G23
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.2  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    28   1.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   1.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.8  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   5.0  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   6.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.6  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   8.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.8  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 240 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 371
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 433 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 317
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 121 DSLCRQLSPVSDPGMCVSVRLTPCRLHYPVPLQRLQRLVS 2
           +S+ +++SP++       +RL P   +YP+ L  L+ LV+
Sbjct: 330 ESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVN 369


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 394 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 230
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 363 FKKFDTPFMKSSWEPNFGFSL 425
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 191 ISDIWHISGGEAFAVMSWLSLWKR 120
           +S + HISG + + V+   S+W+R
Sbjct: 128 LSPLIHISGEDKYKVLCLFSIWRR 151


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 SWLSLWKRFTLPAAVTCLRPGDVCIRETYSVPFTLSSATPAVAAPS 6
           S+L +W   T+P    CLR    CI + Y   FT SS    V  P+
Sbjct: 22  SYLEVWPLVTVPRQCICLR---WCISKEYH-EFTCSSLQFIVIRPA 63


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 279 FINRNDYSLDGKLNLFKSPDTSVD 350
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 105 SCHLSPTRGCVYP*DLLRAVYIIQCHSSGC 16
           SCH  P R         R++  + CHS GC
Sbjct: 30  SCHFVPRRCSTCKRINKRSIRCLSCHSVGC 59


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 54  GVSLTDTHIPGSETGDSCRQSESLPQR*PRHHSEGFATRNMPDIANVPNFNTVGG 218
           G+SL D  +P S  GDS   S SLP    + +  G      P     P F++  G
Sbjct: 156 GLSL-DKSLPSSPKGDSPSLSSSLPSLTTKSNLSGNLNMVTPASTQGPAFSSKHG 209


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 171 FWWRSLRCDVVVIVVEEIHFAGSC 100
           F W   +  ++VI+ + +H +GSC
Sbjct: 380 FMWILPQIQIIVILAQPLHCSGSC 403


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 606 PSSFVVFFYT*XISXRWTLLHTFTL 532
           P+ ++ FFY   IS  + +LHT  L
Sbjct: 297 PAGWMTFFYYFAISLAYMVLHTLVL 321


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 207 TVGGGIDYMFKD-KIGASATAAHTDFIN 287
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,361
Number of Sequences: 5004
Number of extensions: 48142
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)