Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G23
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    31   0.55 
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576...    29   2.2  
02_02_0359 - 9390175-9390416,9390924-9391044,9391069-9391410,939...    29   3.0  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   3.9  
12_02_0412 - 18799217-18801061                                         28   5.2  
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    28   5.2  
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495           27   9.0  

>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 70  IHTSPG-RRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTSTL 210
           + +SP   R VTAAG      +D + + +  SP  +   S  YPT TL
Sbjct: 115 VWSSPAPARNVTAAGATARLQDDGNLVVSSGSPGSVAWQSFDYPTDTL 162


>01_04_0066 -
           15654796-15655098,15655268-15655392,15657249-15657603,
           15658236-15658405,15659404-15659608
          Length = 385

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = -2

Query: 389 HEGCIELLEAGVEIDRGVRTLEE---VQLSVQGVIVTIDEVRVSGGR*CTNLIF--EHIV 225
           H+  +   +A V +D    T E+     LS+ G  V I+EV+ +  R C  ++   + + 
Sbjct: 120 HDCFVRGCDASVLLDSASNTAEKNAAPNLSLAGFEV-IEEVKAAVERECAGVVSCADIVA 178

Query: 224 YSATDSVEVGYISDIWHISGGEAFAVMS 141
            +A DSV   Y   +W +  G     +S
Sbjct: 179 LAARDSVSYQYRRSLWEVETGRRDGTVS 206


>02_02_0359 -
           9390175-9390416,9390924-9391044,9391069-9391410,
           9392400-9392759
          Length = 354

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 233 HIVYSATDSVEVGYISDIWHISGGEAFAVMSWLSLWKRFT 114
           H++      + + +I  +W ISG EA  V S L L   FT
Sbjct: 286 HVLVLGDSYILLAFICQVWIISGAEASLVRSILRLGHSFT 325


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 162 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 251
           A  N P +A   N N   G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 227 VYSATDSVEVGYISDIWHISGGEAFAVM 144
           +YS+   +E G   D+W+I GG   A++
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMI 50


>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 149 QRRLRHQKYARYR*CTQLQHCRWR 220
           QRR RH  + R   C Q +H  WR
Sbjct: 17  QRRRRHDLFERISSCHQFKHAGWR 40


>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
          Length = 728

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +1

Query: 37  DNV-NGTE*VSRI----HTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEIC 177
           DNV  GT  VS      H + G R+++ +  VN+  N NHD+  K  P ++C
Sbjct: 251 DNVATGTNLVSAAKSSEHIAQGSREISLSN-VNVSGN-NHDVQPKIVPEQVC 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,589
Number of Sequences: 37544
Number of extensions: 339627
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)