Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G23
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    28   6.1  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    28   6.1  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    28   6.1  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    27   8.1  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    27   8.1  

>U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical
           protein T19C3.6 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 FALNDITKCIFRQCKCMK*C 555
           FA+ D  K IF +CK MK C
Sbjct: 60  FAMKDTMKSIFAECKAMKTC 79


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
           protein 73, isoform b protein.
          Length = 1638

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 37  DNVNGTE*VSRIHTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTST 207
           +NVN      R HT+  R      G V   H    D+T   S  +IC +  M+   T
Sbjct: 527 ENVNQARSFQRNHTNFQRVAANTYGNVQKLHQVYQDVTKSGS--KICDVDTMHGLMT 581


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
           protein 73, isoform f protein.
          Length = 2140

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 37  DNVNGTE*VSRIHTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTST 207
           +NVN      R HT+  R      G V   H    D+T   S  +IC +  M+   T
Sbjct: 527 ENVNQARSFQRNHTNFQRVAANTYGNVQKLHQVYQDVTKSGS--KICDVDTMHGLMT 581


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
           protein 73, isoform a protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 37  DNVNGTE*VSRIHTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTST 207
           +NVN      R HT+  R      G V   H    D+T   S  +IC +  M+   T
Sbjct: 527 ENVNQARSFQRNHTNFQRVAANTYGNVQKLHQVYQDVTKSGS--KICDVDTMHGLMT 581


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73B protein.
          Length = 1638

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 37  DNVNGTE*VSRIHTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTST 207
           +NVN      R HT+  R      G V   H    D+T   S  +IC +  M+   T
Sbjct: 527 ENVNQARSFQRNHTNFQRVAANTYGNVQKLHQVYQDVTKSGS--KICDVDTMHGLMT 581


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 37  DNVNGTE*VSRIHTSPGRRQVTAAGKVNLFHNDNHDITAKASPPEICQISLMYPTST 207
           +NVN      R HT+  R      G V   H    D+T   S  +IC +  M+   T
Sbjct: 527 ENVNQARSFQRNHTNFQRVAANTYGNVQKLHQVYQDVTKSGS--KICDVDTMHGLMT 581


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 153 EGFATRNMPDIANVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDY 299
           +GF   + P  + + +FNT GG +    K   GA+   + ++F N N +
Sbjct: 508 QGFGDTDAPSKSGLGSFNTGGGAV----KSAFGAAGFGSSSNFGNGNTF 552


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 153 EGFATRNMPDIANVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDY 299
           +GF   + P  + + +FNT GG +    K   GA+   + ++F N N +
Sbjct: 508 QGFGDTDAPSKSGLGSFNTGGGAV----KSAFGAAGFGSSSNFGNGNTF 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,131
Number of Sequences: 27780
Number of extensions: 275347
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)