Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G21
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0904 + 25832026-25832643 122 2e-28
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 66 2e-11
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 59 2e-09
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 30 1.6
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 28 6.3
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 27 8.3
>06_03_0904 + 25832026-25832643
Length = 205
Score = 122 bits (295), Expect = 2e-28
Identities = 57/146 (39%), Positives = 96/146 (65%)
Frame = +2
Query: 146 LFNLKFAVKELERNSXXXXXXXXXXXXXXXXXXXXGNMEGARIHAENAIRQKNQALNYLR 325
+F+LKF K L+R + GNM+GARI+AENAIR++ + +NYLR
Sbjct: 11 IFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIRKRTEHMNYLR 70
Query: 326 MSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDV 505
+++R+DAV +R+ T + + SMA +VK++D+A+ + NL+K+S MD FE QF +++V
Sbjct: 71 LASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDNFERQFVNMEV 130
Query: 506 QSSYMENAMSQTTTTTVPQGDVDQLL 583
Q+ +ME AM+ +T+ + P+ +V+ L+
Sbjct: 131 QAEFMEGAMAGSTSLSTPETEVNSLM 156
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/140 (25%), Positives = 68/140 (48%)
Frame = +2
Query: 164 AVKELERNSXXXXXXXXXXXXXXXXXXXXGNMEGARIHAENAIRQKNQALNYLRMSARVD 343
+++E+ER G M +I A++ IR ++Q + + +++
Sbjct: 25 SIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAKDLIRTRHQITKFYALKSQLQ 84
Query: 344 AVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYME 523
VS R+QT +T+ + +M GV KAM + MNL + +M +FE Q E +++ SS M
Sbjct: 85 GVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQKIMREFEIQNEKMEIVSSTMN 144
Query: 524 NAMSQTTTTTVPQGDVDQLL 583
+A+ + + ++L+
Sbjct: 145 DAIDDALEGDEEEEETEELV 164
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +2
Query: 254 NMEGA-RIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAA 430
N +GA ++ A++ IR ++Q + ++ +++ VS RVQT +T+ + ++M GV KAM
Sbjct: 79 NGQGAVKVMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQM 138
Query: 431 MKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDQ 577
+ +NL + +M +FE Q E +++ S M +A+ +GD DQ
Sbjct: 139 NRQLNLPGLQRIMMEFERQNERMEMTSEVMGDAIDDAL-----EGDEDQ 182
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +2
Query: 272 IHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTR-KVTNSMAGVVKAMDAAMKSMNL 448
I E + +Q + SA + S++ T+ T++ KV S +A+ A +
Sbjct: 663 ISKEAKLASLSQPVGATSASASIQGSSAQASTSTTSQSKVVRSKK---RAVSVATSLRSN 719
Query: 449 EKISTLMDKFESQFEDL-DVQSSYMENAMSQTTTTTVPQGDVDQ 577
+K+S+L+DK+++ E+L D + E+A+ Q D+D+
Sbjct: 720 KKVSSLVDKWKAAKEELRDEEDEEPESALDALERKR--QKDIDE 761
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 RIHAE-NAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMN 445
++ AE N+++QK N +++ R +A + + T RK+ S +VK A S
Sbjct: 184 QLEAEVNSLKQKLVEYNKKQLALRANATAINDKKEETHRKIAKSDFELVKL--AQENSKL 241
Query: 446 LEKISTLMDKFESQFEDLDVQSSYMENA 529
L KI +K + E+ + ++NA
Sbjct: 242 LSKIVQSPEKLQRALEEKKTARAELKNA 269
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 269 RIHAENAIRQKNQALNYLRMSARVDAVSSRVQTAL--TTRKVTNSMAGVVKAMDAAMKSM 442
+I E + N + ++A++ + +++ T R+V+ +++A D A
Sbjct: 1021 KIEKEKTVELSNLEREVISLTAQLSSTEEERESSTLDTIREVS-----ILRA-DKAKLEA 1074
Query: 443 NLEKISTLMDKFESQFEDL 499
NLE ++ M +ESQ EDL
Sbjct: 1075 NLEDVNAQMIHYESQLEDL 1093
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,074
Number of Sequences: 37544
Number of extensions: 213366
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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