Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G20
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 2.6
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 2.6
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 3.4
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 4.5
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 4.5
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 24 6.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 24 6.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 6.0
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 24 7.9
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 24 7.9
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 24 7.9
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 24 7.9
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 2.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 286 DEHCHVTEIDPKKP 327
D H HV E+ PK+P
Sbjct: 210 DRHLHVAEVPPKRP 223
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -3
Query: 192 KRYHIIDFFYVAAFLMCQFLWFLRQGPYPYRSVNGTNNHGYY*NFRHHFYLLINMI 25
KRY + + + L+C+FL F G + S+ + G++ N+R ++L + +
Sbjct: 19 KRYDTLHVWKLIKLLICKFLLFHDFGTALFTSLVKASMLGFH-NWRRTYWLYLKKL 73
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 165 YVAAFLMCQFLWFLRQGPYPYRSVNGTNNH 76
YV + C + W L + P+ RS TN++
Sbjct: 338 YVQRLVRCDYTWHLCKSPFK-RSTGNTNDN 366
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 138 FLWFLRQGPYP 106
FLW LRQG YP
Sbjct: 269 FLWDLRQGQYP 279
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 4.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 55 SKILIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYR 228
S+ L + + +N+ +I LP++ KE H E + EI +P I CY+
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEKVHAE---LDEIAKTIPRVQNTDQIKLCYQ 244
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 309 LCDVAMFVICSDNTTRSVINHASSTGN 229
LCD A V+C +N + V N + G+
Sbjct: 44 LCDKAREVLCQENNVQPVRNPVTVCGD 70
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 131 GFLGKAPIHTAALTVQTI 78
G + +AP+HTAAL V+ +
Sbjct: 336 GLIPQAPMHTAALCVKRV 353
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 287 SFVATTPQEA*SIMLPPQVIL*QCPMGLSSVPNGTTSLIS 168
SF TTP+ + + P + P+ SSV N +T + S
Sbjct: 359 SFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITS 398
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 23.8 bits (49), Expect = 7.9
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 88 TVNAAVWIGALPKK----PKE-LAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMI 252
T+ A VW G L K PK + H + +K + G++ G+++
Sbjct: 36 TMKACVWDGPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAIL 95
Query: 253 DYASCGVVATNDEHCHVTEI 312
+ SCG+VA + + EI
Sbjct: 96 GHESCGIVAEKGDEVNNLEI 115
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 136 ELAHKEGCYIKEINDVVPFGTE 201
++A K+G +KEIN V F E
Sbjct: 449 KIASKDGTNLKEINSVPEFSDE 470
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 117 GPYPYRSVNGTNNHGYY*NFRH-HFYLLINM 28
GPY + +N GY+ + +H F L NM
Sbjct: 359 GPYTASQIQAWSNEGYFTDAKHAAFIQLANM 389
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 7.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 303 DVAMFVICSDNTTRSVINHASSTGNSVAMSDGLEFCSKRYHIIDFFYVAA 154
D+ +VI D T V TGN M L+FC K + + VAA
Sbjct: 250 DLVQYVI--DVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAA 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,372
Number of Sequences: 5004
Number of extensions: 32851
Number of successful extensions: 77
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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