Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G20
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545...    30   0.59 
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157...    27   5.5  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    26   9.6  
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777...    26   9.6  
03_05_0209 + 22014556-22015308                                         26   9.6  

>02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587,
            32955089-32955140,32955237-32955349,32955542-32955610,
            32955942-32956049,32956517-32956661,32957245-32957476,
            32957567-32957853,32957951-32958087,32958520-32958667,
            32959464-32959595,32960239-32960367,32960707-32960834,
            32960911-32961075,32961462-32961587,32962088-32962161,
            32962285-32962534,32962875-32963054,32963128-32963361,
            32964771-32964840,32965065-32965177,32965403-32965511,
            32965639-32965688,32965823-32965889,32966131-32966203,
            32966393-32966448,32966729-32966831,32967377-32967458,
            32967717-32967779,32967918-32967977,32968356-32968448,
            32968561-32968623,32968699-32968797
          Length = 1363

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 191  NGTTSLISFM*QPSLCANSFGFLGKAPIHTAALTVQTIMD 72
            N T  + SF+  P+LCA   G +   P+  AA  ++T+ +
Sbjct: 965  NYTRDVGSFLDHPTLCARCHGVIDLPPVPAAAAGIETLRE 1004


>03_06_0636 -
           35215034-35215336,35215417-35215584,35215599-35215799,
           35215877-35215962,35216037-35216229,35216304-35216489
          Length = 378

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 270 TTRSVINHASSTGNSVA-MSDGLEFC-SKRYHIIDFF 166
           T  SVI H SST NS A  S+  E C + +  +IDF+
Sbjct: 196 TLYSVITHLSSTQNSPASSSESSENCHAAKAAVIDFY 232


>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
            1107272-1107531,1107897-1108084,1108187-1108311,
            1108485-1108521,1108802-1108893,1109023-1109133,
            1109242-1109352,1109576-1109669,1109833-1109945,
            1110316-1110411,1110510-1110617,1110665-1110814,
            1110910-1110990,1111205-1111276,1111553-1111646,
            1111759-1111787,1111870-1111967,1112065-1112160,
            1112399-1112620,1113002-1113158,1113472-1113627,
            1113703-1113930
          Length = 1045

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 183  GTVWNRTQAHRTLLQNYLWRKHD*LRFLWCCRYK*RTLPRHRDRPQ 320
            G +W   ++H   L  + W+     +     R+   T+ R R RPQ
Sbjct: 990  GKLWRWKRSHHQWLLQFKWKWQKPWKLSEMIRHSDETMTRTRPRPQ 1035


>03_06_0677 +
           35476009-35476014,35476974-35477474,35477574-35477762,
           35477925-35477945
          Length = 238

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 150 LMCQFLWFLRQGPYPYRSVNGTNNHG 73
           L  Q+    R+G  P RSVN  N+HG
Sbjct: 21  LYTQYFENARKGKSPGRSVNPNNHHG 46


>03_05_0209 + 22014556-22015308
          Length = 250

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +1

Query: 244 SMIDYASCGVVATND---EHCHVTEIDPKKPYPECCPD 348
           S  D+ +CG     D   +H H   ++P      C PD
Sbjct: 97  STSDFTACGHTGVGDKQEQHHHQVGVEPSSATESCVPD 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,051
Number of Sequences: 37544
Number of extensions: 216286
Number of successful extensions: 480
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)