Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G20
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    26   8.7  

>U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical
           protein D2096.6 protein.
          Length = 171

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 307 EIDPKKPYPECCP 345
           E DPK+P+P+C P
Sbjct: 61  ECDPKRPWPQCPP 73


>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 307 EIDPKKPYPECCP 345
           E DPK+P+P+C P
Sbjct: 120 ECDPKRPWPQCPP 132


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 64  LIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGG 243
           ++I+ I+C  N A WI    K     + + G  I E+N   P G   K +G    + CG 
Sbjct: 650 IVIASIMCVYNKADWIELATK-----SEEAGADILELNLSCPHGMGEKGMG----LACGQ 700

Query: 244 S 246
           S
Sbjct: 701 S 701


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  VSKILIISMIVCTVNAAVWIGALP 123
           V+ ILI+ +I+C +   V+   LP
Sbjct: 66  VAYILIVCLIICIIKTCVYFSTLP 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,835,004
Number of Sequences: 27780
Number of extensions: 189407
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)