Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G19
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.2
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 4.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 5.6
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 5.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 7.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.3
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 24 9.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 9.7
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.7
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 24 9.7
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +3
Query: 21 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 200
I ++ G L NN AF + + T + S++++ GL+ + K
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256
Query: 201 AAHTDFFNKN 230
+ T FF +N
Sbjct: 257 SNATSFFGEN 266
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 162 EYMFKDKIGASASAAHTDFFNKNDYXLGGKLNLFKTPSTSLDFTAG 299
E++ + G S+++ +F N L L+LF +PS+ TAG
Sbjct: 223 EFLLPNLFGNSSTSPQDNFGTSNS-ALSRNLDLFGSPSSENKSTAG 267
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 115 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 207
P F + + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 18 GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 149
G GDK S AGK N+ + S + + S+ PS N+V
Sbjct: 266 GFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 85 PRRRSRPEICPPFPI 129
PRRR RP PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/32 (21%), Positives = 20/32 (62%)
Frame = +3
Query: 54 NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 149
++ H + H L++ +F+T+ + T + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Frame = -1
Query: 171 TYIRDHHQQCWLMVNGKWWA 112
TY+ CW + WWA
Sbjct: 756 TYVYSSTMLCWQRITEPWWA 775
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 352 QVLGSQEDFMKGVSNLCQPA 293
QVLG +DF NL PA
Sbjct: 33 QVLGCSDDFFASCENLINPA 52
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 127 IYHQPTLLVVVSNICSRTRSVHQ 195
+YHQ TL + ICS+ ++V Q
Sbjct: 2124 LYHQLTLYQLQDLICSKCKTVKQ 2146
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 288 FTAGWHKFDTPFMKSSWEPSTWFS 359
F+AG+ F+T K W+P +W S
Sbjct: 60 FSAGY--FNTVGSKEGWQPKSWKS 81
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 106 EICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLT 225
EICP Q L +C R +H+ L+ +S+T
Sbjct: 655 EICPVTYSIEQEKKLEKYKRVCLRGLDIHRNRRLSQLSVT 694
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,762
Number of Sequences: 5004
Number of extensions: 38702
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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