Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G19
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC006757-1|AAF60544.1|  163|Caenorhabditis elegans Hypothetical ...    27   6.6  

>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 218
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>AC006757-1|AAF60544.1|  163|Caenorhabditis elegans Hypothetical
           protein Y40C7B.4 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 418 KEKAYYNIMKIKV--N*KVLDNENQVLGSQEDFMKGVSNLCQPAVKSSDVDGVLNRFSLP 245
           +E A  NI K K+  N   LDNE  V+G +   ++  + + QP+  ++    V   F+ P
Sbjct: 83  REGANLNIRKRKLIENDNRLDNEADVIGKKSRALEKQNVIVQPSAIATPQPAVTPEFTTP 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,861
Number of Sequences: 27780
Number of extensions: 222481
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)