Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G17
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.3  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   4.0  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   7.0  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 120 INNPEGSYKFGFETEDGITREEVGELKEALDEENKPHPVIAVR-GSYSYLNTENKPEIV 293
           INN + +    F +      E   ++ +A+ EEN  H  I  + G  +   T++KPEIV
Sbjct: 339 INNAQAAGMMAFSSSSISAIEHSAKIIQAIKEENVTHLRICEQYGLSASQITKSKPEIV 397


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 189 GELKEALDEENKPHPVIAVRGSYSYLNTENKPEIVNYFADETGYHASGDSIPKPV 353
           G +KE   +  K HP+  VR    +L+ E+ P+++         H S   +  P+
Sbjct: 286 GPMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGVCLHTSSSGLDLPM 340


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 211 SRASFNSPTSSRVIPSSVSKPNL*LPSGL 125
           S  SF SPTSS   PSS    +L  PS +
Sbjct: 116 SSTSFFSPTSSEYTPSSTESSSLLDPSSV 144


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 212 IKSFLQFSNFLTSDTIFSFETEFVAALGIINKFRTE 105
           IKSF   SN   SDT F  E+  +    ++NK R E
Sbjct: 380 IKSFFDASNEFPSDTPFK-ESSSIKINELVNKMREE 414


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 123 NNPEGSYKFGFETEDGITREEVGELKEALDEENKPHPVIAVRGSYSYLNTEN 278
           NN +G  K   E EDG+T  +   +  + +E   P  +       +  NTEN
Sbjct: 198 NNSKGVEK-SEENEDGVTDNDSSNVNSSTNESPNPTDINVCSNDDATDNTEN 248


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 524 SASIARKSYHSVLNDTHCHI 583
           S++IA  SY+++   T+CH+
Sbjct: 54  SSAIASTSYYNISEGTYCHV 73


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 EFINNPEGSYKFGFETEDGITREEVGELKEALDEENK 224
           E  +N E  Y FG  +ED    EE+ +  EA DEE++
Sbjct: 44  ELEDNDEQGYSFGVNSEDD---EEI-DSDEAFDEEDE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,012
Number of Sequences: 5004
Number of extensions: 48645
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)