Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G17
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0116 - 884400-884783,887864-888031,888285-888479,888668-88...    29   3.1  
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    29   3.1  
10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632...    27   9.5  
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694...    27   9.5  
03_01_0061 + 490037-490045,490121-490302,490551-490671,491933-49...    27   9.5  

>12_01_0116 -
           884400-884783,887864-888031,888285-888479,888668-888793,
           888900-889082,889633-889755
          Length = 392

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 217 SSSRASFNSPTSSRVIPSSVSKPNL*LP 134
           SSS  S NS +S+  +PS VSKPN  +P
Sbjct: 362 SSSPKSSNSKSSAANLPSYVSKPNALVP 389


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 90  EPTKILRSEFINNP--EGSYKFGFETEDGITREEVGELKEALDEENK 224
           EP  I+R   +N P  +  ++     EDG+ +  + + KE+LDE  +
Sbjct: 393 EPDHIVRENSVNTPSSDSGHRRNSNLEDGLAQPFLIDAKESLDENGE 439


>10_08_0028 -
           14262607-14262783,14262886-14262932,14263014-14263281,
           14263374-14263486,14264362-14264400,14264531-14264591,
           14264685-14264834
          Length = 284

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 420 AN*TRIVDSEMSARIC*ALIFWRQAWV-WNHH*RGNRSRQRNNLLS-LACFQY*GKNRSH 247
           AN T    S +    C  LIF  QA+  + H  + N  +  + + + L C ++   N   
Sbjct: 184 ANETDPASSSLLLMPCSLLIFKDQAYTDYLHGIQDNELQNLDKVANMLQCPEFKHLNSGD 243

Query: 246 GLQSQDEACSLHQ 208
           G  + DE+CSL Q
Sbjct: 244 GQGNTDESCSLEQ 256


>03_04_0076 -
           17068516-17068838,17068897-17069198,17069282-17069435,
           17069506-17069965,17070413-17070492,17070813-17070869,
           17071757-17071838
          Length = 485

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 263 VRIGATDCNHRMRLVLFIKSFLQFSNFLTSDTIFSFETEFVAALGIINKFRTENL---GW 93
           V++  T+ N+RM    +    +Q  NF    T+FSF  + +   G+I+++  + L     
Sbjct: 325 VKVTITNWNYRMNYSQW-NLVVQHPNFENVSTVFSFNYKSLNPYGVISEYLLQLLNDTAM 383

Query: 92  FWRSSYGN 69
            W   Y N
Sbjct: 384 MWGVKYYN 391


>03_01_0061 +
           490037-490045,490121-490302,490551-490671,491933-492106,
           492246-492409,492506-492593,492687-492740,492837-492917,
           493075-493083
          Length = 293

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 EGSYKFGFETEDGITREEVGELKEALDEENKPHPVIAVR 248
           EG+Y   ++  D +T E +   K  L++E++  P  A+R
Sbjct: 11  EGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,881
Number of Sequences: 37544
Number of extensions: 276261
Number of successful extensions: 749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)