Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G17
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    48   8e-08
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 27/73 (36%), Positives = 42/73 (57%)
 Frame = +3

Query: 126 NPEGSYKFGFETEDGITREEVGELKEALDEENKPHPVIAVRGSYSYLNTENKPEIVNYFA 305
           N +G+Y   FET +GI+ +E G+ K+ +D E    PV++ +GS SY   + +   + Y A
Sbjct: 37  NFDGNYINNFETSNGISHQESGQPKQ-VDNET---PVVS-QGSDSYTAPDGQQVSITYVA 91

Query: 306 DETGYHASGDSIP 344
           DE G+   G  IP
Sbjct: 92  DENGFQVQGSHIP 104


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 386 VLVFVRRLSSGDRLGYGITTSVVTGLVS 303
           V  ++ R ++ DR+G GITT +    +S
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTIS 291


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 363 IFWRQAWVWN 334
           +FW  AW WN
Sbjct: 167 VFWGSAWQWN 176


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 304  LTRPVTTLVVIPYPSLSPEDKR---LTNTSTHF*INYPCLVSNNGLFR 438
            L+ P+ T  +   PS+ PED R   LT+ S       P    +NG+ +
Sbjct: 1098 LSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 304  LTRPVTTLVVIPYPSLSPEDKR---LTNTSTHF*INYPCLVSNNGLFR 438
            L+ P+ T  +   PS+ PED R   LT+ S       P    +NG+ +
Sbjct: 1094 LSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1141


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 400 NYPCLVSNNGLFRDRTFFLT 459
           NY CL  +    RDR F+ T
Sbjct: 286 NYSCLKVDLIFTRDRAFYFT 305


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 400 NYPCLVSNNGLFRDRTFFLT 459
           NY CL  +    RDR F+ T
Sbjct: 255 NYSCLKVDLIFTRDRAFYFT 274


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 400 NYPCLVSNNGLFRDRTFFLT 459
           NY CL  +    RDR F+ T
Sbjct: 306 NYSCLKVDLIFTRDRAFYFT 325


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 400 NYPCLVSNNGLFRDRTFFLT 459
           NY CL  +    RDR F+ T
Sbjct: 255 NYSCLKVDLIFTRDRAFYFT 274


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 273 ENKPEI-VNYFA-DETGYHASGDSIPKPV 353
           EN  EI +N+   D    + SGD++P+P+
Sbjct: 167 ENGVEIGINFDKYDNIQVNVSGDNVPQPI 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,890
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)