Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G16
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    29   0.31 
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    27   1.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    24   8.8  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -2

Query: 363 HRLRHRLAPSFLYTHKTVHCCYQRQ*PYWIQVGFPQPSLCC---RKDPGVRCSSSGSTVW 193
           H L + L  S+ ++     C  Q +    + VGF    +     R +P V   SSG  VW
Sbjct: 256 HTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGLITFSLGRDEPSVTMDSSGKVVW 315

Query: 192 RN 187
            N
Sbjct: 316 SN 317


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 120 CTREIKQVCGSDGVTYGNPCLLNCA 194
           C R +  +  S+ V YG P  LNCA
Sbjct: 110 CERLLPYLVASNPVNYGRPWRLNCA 134


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 84  QEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNCATQSN 206
           QE++   +  C CT +  + C    + + NP +   +T  N
Sbjct: 743 QEIECCSVDDCTCTHDAPEEC----LEWANPPVQKLSTPHN 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,195
Number of Sequences: 5004
Number of extensions: 32318
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)