Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G16
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 28 2.7
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 2.7
10_01_0162 + 1820761-1821855 27 4.7
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 27 4.7
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 27 4.7
05_07_0218 + 28470325-28470454,28470543-28471276,28471355-284718... 27 4.7
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 27 4.7
04_03_0204 + 12643435-12644001 27 4.7
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 27 4.7
02_05_0722 + 31220798-31220887,31220992-31221036,31221524-312215... 27 4.7
01_01_0363 + 2850954-2853675,2853819-2854225 27 4.7
07_01_0622 - 4625246-4627759 27 6.2
07_01_0211 + 1568646-1568716,1568722-1569085 27 6.2
07_01_0210 + 1555941-1556390 27 6.2
07_01_0209 + 1544347-1544796 27 6.2
07_01_0208 + 1532691-1533209 27 6.2
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 27 6.2
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059... 24 6.9
06_01_1116 + 9197761-9199956 26 8.2
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 26 8.2
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 26 8.2
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 27.9 bits (59), Expect = 2.7
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -3
Query: 275 FRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVSDAVATANLFDLPRADTWLYIGN 96
F ++ H +H +V A R A+Q +RVAV AV F + ++G+
Sbjct: 306 FPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGS 365
Query: 95 --FNFLAFA--AMFHL 60
L+F A+FHL
Sbjct: 366 TVCALLSFVLPALFHL 381
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 130 SRVQIHGCISATLTSWHS 77
+RV+ H CIS+++ WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313
>10_01_0162 + 1820761-1821855
Length = 364
Score = 27.1 bits (57), Expect = 4.7
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Frame = +3
Query: 39 RPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGVTYGNPCL-LNCATQSNPSL 215
R AP L +HR + A + +C + V V + NP L P+
Sbjct: 69 RYTAPQLLHRHRQDAAAAAAATVALRVCAHGRRHVVFYVCVRFANPWLDTYWICLDAPAA 128
Query: 216 SIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGV 365
+ G D+ + + + ++ + + A C R L +CA NGV
Sbjct: 129 AALLAGGLDDTARALARRERGARLAALWSALADR-LCRRVLVDLCAKNGV 177
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 173 PVPVELRHTVEPELEHRTPGSLRQQSEGCGKP 268
P P T+ P ++ + G+L + EG GKP
Sbjct: 358 PAPPAAERTLYPSMDPQRMGALVESQEGDGKP 389
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 112 GCISATLTSWHSPRCFISRDGANGREHSSE 23
GCI+ ++T H+ CF+ A+G + E
Sbjct: 305 GCIAISMTLHHTSLCFVCSHLASGEKEGDE 334
>05_07_0218 +
28470325-28470454,28470543-28471276,28471355-28471816,
28471898-28472730,28472813-28472983,28473063-28473180
Length = 815
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +3
Query: 12 PNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNC 191
P KC L P P+L + H ++ +ADI + IK +D +P L+
Sbjct: 543 PPKCKLSIEAPRGPALSVPHSPGGADMDLADIAQSLA--PIKTTRKAD----SSPPLVKG 596
Query: 192 ATQSNPSLSIEHPGPCDNRVKVVENQP--ESNKVI 290
+ +E P R K + P +S KV+
Sbjct: 597 QKRERGKGKVEELAPEPKRGKAATSMPVSKSGKVV 631
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 172 LP*VTPSLPQTCLISRVQIHGCISATLTSWHSPR 71
LP + P +P TCL R +H S+T T H+ +
Sbjct: 198 LPTLLPCVPDTCLTDRNLLHIRESSTKTVLHAAK 231
>04_03_0204 + 12643435-12644001
Length = 188
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 243 CRKDPGVRCSSSGSTVWRNSTGTGC 169
C PG C + VWR +T GC
Sbjct: 135 CAAPPGRTCGAYTQVVWRATTQLGC 159
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +3
Query: 183 LNCATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLE 341
L+ A Q + +S E P +++ + +++ E+++ + N+N P+ A +N+E
Sbjct: 261 LSAAVQESMVVSPEAPAVEESQAEGHKDEKEASEATEIYNDNQPNVADAQNVE 313
>02_05_0722 +
31220798-31220887,31220992-31221036,31221524-31221595,
31221743-31221871
Length = 111
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 130 SRVQIHGCISATLTSWHSPRCFISR 56
+R Q+HG ATL +H PR SR
Sbjct: 19 NRAQLHGRCRATLGGFHDPRSNSSR 43
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 112 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG 11
G S TLTSW+S F + +G H ++G
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVG 64
>07_01_0622 - 4625246-4627759
Length = 837
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 338 QVSCTRTRRCIVVINDNNLIGFRLVFHNLHSVVART 231
Q+ +R +V+N+NN +++ + H++V RT
Sbjct: 113 QLKISRDGNLAIVLNNNNTSSESIIWSSTHTIVNRT 148
>07_01_0211 + 1568646-1568716,1568722-1569085
Length = 144
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = -2
Query: 264 FPQPSLCCRKDPGVRCSSSGSTVWRNSTGTGC 169
+ S C G C VW NST GC
Sbjct: 84 YDHDSNSCSAPAGSSCGHYTQVVWSNSTAIGC 115
>07_01_0210 + 1555941-1556390
Length = 149
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = -2
Query: 264 FPQPSLCCRKDPGVRCSSSGSTVWRNSTGTGC 169
+ S C G C VW NST GC
Sbjct: 89 YDHDSNSCSAPAGSSCGHYTQVVWSNSTAIGC 120
>07_01_0209 + 1544347-1544796
Length = 149
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 243 CRKDPGVRCSSSGSTVWRNSTGTGC 169
C G C VWR+ST GC
Sbjct: 96 CSAPEGSSCGHYTQVVWRDSTAIGC 120
>07_01_0208 + 1532691-1533209
Length = 172
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 243 CRKDPGVRCSSSGSTVWRNSTGTGC 169
C G C VWR+ST GC
Sbjct: 119 CSAPSGQSCGHYTQVVWRSSTAIGC 143
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 189 CATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDNN-NAPSCACTRNLEPVCA 353
CA + S S P P + QPE K + V N AP+ A R +P A
Sbjct: 88 CAAFPSSSSSKSSPLPTPPPPPPTQPQPEQQKPVTVQENLPAPTTAPARASQPAAA 143
>01_06_0943 +
33204112-33204136,33204703-33205743,33205786-33205926,
33206205-33206245,33208250-33208346,33208599-33208836,
33208937-33209087,33209155-33209454
Length = 677
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +3
Query: 297 DNNNAPSCACTRNLEP---VCASNGVT 368
DN+ P C CT+ P + +NG T
Sbjct: 292 DNDAVPKCYCTKGFVPQDIIAYTNGYT 318
Score = 21.0 bits (42), Expect(2) = 6.9
Identities = 10/43 (23%), Positives = 15/43 (34%)
Frame = +3
Query: 174 PCLLNCATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDN 302
P C +N P D K+V N S ++ D+
Sbjct: 221 PIFFKCNNSTNDITCTYSANPSDRMTKIVLNSTGSLSIMQFDS 263
>06_01_1116 + 9197761-9199956
Length = 731
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 12 PNKCSLECSRPLAPSLEMKHRGECQEVKVADI-QPCICTREI 134
P KCS+ CS P+L + C +A I Q CT +I
Sbjct: 63 PAKCSMNCS---TPNLTVAAMVSCTSTSLASICQDITCTTDI 101
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 173 PVPVELRHTVEPELEHRTPGSLRQQSEGCGKP 268
P P T+ P ++ + G+L + EG GKP
Sbjct: 358 PAPPGAERTLYPSMDPQRMGALVKSQEGDGKP 389
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 114 CICTREIKQVCGSDGVTYG---NPCLLNCATQSNPSLSIEH 227
CI EI + GS G++YG N C+ +P+ +++
Sbjct: 98 CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKY 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,674
Number of Sequences: 37544
Number of extensions: 241595
Number of successful extensions: 775
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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