Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G15
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.85 
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.0  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -1

Query: 554 LEQYTPEDMLCVKGRPPRYDSACNGDSGSGLVDDT----GRLIGVASWV 420
           L+ + P     +KG P +Y  +C      GL+ DT    G L  +  WV
Sbjct: 242 LDSFLPGTTQAIKGYPTQYFGSCFKQLSEGLIFDTPGYRGNLKSLLPWV 290


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 177 SNFLFYFCFHYLIFLNLYTSILFQSFCCLADL 82
           +NF  +  F Y + + L+TS+L +   C ADL
Sbjct: 58  TNFTKFSKFVYYLAITLHTSLLTKLIYCHADL 89


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 177 TSECKNFDIHNNLYVDIGLLHY 242
           T  C NFDI   +++D GLL +
Sbjct: 873 TKFCLNFDITAKVFIDNGLLDF 894


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 23  LHFIFVLVSIIN*TPHYLSHR 85
           LHF FV V  I  +PH +S+R
Sbjct: 209 LHFSFVTVDAIPESPHLVSNR 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,413
Number of Sequences: 5004
Number of extensions: 44931
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)