Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G15
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    29   2.0  
09_01_0080 - 1168032-1168046,1168374-1168431,1168516-1168631,116...    27   8.1  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    27   8.1  

>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
            20164566-20166466,20166557-20166650,20166953-20167440,
            20167919-20168599,20168870-20168944,20170148-20170210,
            20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 135  EKLSNENKSKIRNLTSECKNFDIH 206
            E L ++ K+K+R L+S CK+ D+H
Sbjct: 1777 EFLDSKRKNKVRLLSSTCKSHDVH 1800


>09_01_0080 -
           1168032-1168046,1168374-1168431,1168516-1168631,
           1169310-1169368,1169832-1169880,1170314-1170378,
           1170477-1170564,1171212-1171277
          Length = 171

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -1

Query: 476 SGSGLVDDTGRLIGVASWVQNDAIECKNG------NIVVFSRVSSVRDWIKQVTKI*TK 318
           SG  +VDDTG+L+GV S     A++  +G      N  +F  V S     +++ ++ +K
Sbjct: 62  SGFPVVDDTGKLVGVVSDYDLLALDSISGSGLTGTNTSMFPEVDSTWKTFREIQRLLSK 120


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 521 VKGRPPRYDSACNGDSGSGLVDDTGRLIGVASWVQNDA-IECKNGNIVVFSRVSS 360
           V  +P    SA + D G+GL    G L+G+AS+  +D   E  N + V  S +SS
Sbjct: 474 VPAKPTNVSSADHSD-GTGLSSPKGALLGLASYDSDDEDDEGDNEDKVPVSNLSS 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,904,270
Number of Sequences: 37544
Number of extensions: 267175
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)