Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G15
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.71 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 569  EVCSTLEQYTPEDMLCVKGRPPRYDSACNG 480
            ++ ST+++YT E++LC   R   Y +A NG
Sbjct: 1414 QISSTVQKYTLENLLC-GSRYQIYVTAYNG 1442


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 177 SNFLFYFCFHYLIFLNLY--TSILFQSFC 97
           SNFL  FC    + +N Y  T +L   FC
Sbjct: 97  SNFLMMFCMSPPMVINCYYETWVLGPLFC 125


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 126 TSLEKLSNENKSKIRNLTSECK 191
           TSLE+L+N N  +  N+ + C+
Sbjct: 37  TSLEELANRNAIQSDNVFANCE 58


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 446 RLIGVASWVQNDAIECKNGN 387
           R+IG  SWV  ++  C N +
Sbjct: 348 RIIGRRSWVTRESQICNNSS 367



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 DIHNNLYVDIGLLHYN*TSLNCIL 269
           D++  LY+  G L+Y  T++N IL
Sbjct: 304 DLNEWLYILSGCLYYFSTTINPIL 327


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 90  RDNKKIGKV*TCTSLEKLSNENKSKIRNLTSECKNFDIHNNLYVDIGLLHYN 245
           R+  +  K+ +  S + + N N  K     +   N + +NN   +   L+YN
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYN 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,276
Number of Sequences: 438
Number of extensions: 3292
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)