Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G14
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   247   6e-67
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    59   3e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    42   4e-05
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   6.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   6.1  
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom...    24   8.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.0  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    24   8.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   8.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    24   8.0  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  247 bits (604), Expect = 6e-67
 Identities = 122/136 (89%), Positives = 127/136 (93%)
 Frame = +3

Query: 3   KAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVAL 182
           KAHGGYSVF GVGERTREGNDLY EM E+GVI L+ + SK ALV+GQMNEPPGARARVAL
Sbjct: 222 KAHGGYSVFTGVGERTREGNDLYREMQETGVIKLEGE-SKAALVFGQMNEPPGARARVAL 280

Query: 183 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 362
           TGLTVAEYFRD EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQE
Sbjct: 281 TGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQE 340

Query: 363 RITTTKKGSITSVQAI 410
           RITTTKKGSITSVQA+
Sbjct: 341 RITTTKKGSITSVQAV 356


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
 Frame = +3

Query: 24  VFAGVGERTREGNDLYHEMIESGV-ISLKDKT--SKVALVYGQMNEPPGARARVALTGLT 194
           V+ G GER  E  ++  +  E  + I+ K +    +  LV    N P  AR     TG+T
Sbjct: 281 VYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAREASIYTGIT 340

Query: 195 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 365
           +AEY+RDQ G++V +  D+  R+ +A  E+S  L  +P+  GY   L   + +  ER
Sbjct: 341 LAEYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYER 396


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
 Frame = +3

Query: 24  VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 203
           VFA +G           +  E+G         +V L     N+P   R       L+ +E
Sbjct: 208 VFAAMGVNLETARFFQRDFEENGSFE------RVTLFLNLANDPTIERIITPRLALSASE 261

Query: 204 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTT 377
           +   Q  + VL  + ++  +  A  EVSA    +P   GY   + TD+ T+ ER      
Sbjct: 262 FLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEG 321

Query: 378 KKGSITSV 401
           + GSIT +
Sbjct: 322 RNGSITQI 329


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 147 SFVHRQELPWKSCLSGR*PRTQSFHGTNHY 58
           +F +   +PWK+C     P  +++ G  HY
Sbjct: 15  AFANNLNIPWKAC-----PNYKTYSGRRHY 39


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 42  ERTREGNDLYHEMIESGVISLKDKTSK 122
           +R+  GN+   E I++ +  LK+KT+K
Sbjct: 52  KRSENGNNAGMETIQNRISELKEKTAK 78


>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 160 PGGSFICP*TRATLEV-LSFREMTPDSIISWYKSLPSRVRSPTP 32
           PG + I   T ATL   L F+ +TP S++    ++     SPTP
Sbjct: 41  PGAAVIDSITEATLTAALVFQALTP-SVLDGVDAIAVACYSPTP 83


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 85  SIISWYKSLPSRVRSPTPANTE*PP 11
           S+ S  KS PSRV+ PT   ++ PP
Sbjct: 199 SLSSTIKSPPSRVKLPTSILSKSPP 223


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 326 AHSSH*HGYYARENYHYQEGFHYF 397
           +H  H HGY+   N +Y +  + +
Sbjct: 331 SHDRHQHGYHGNANPYYAQNMNMY 354


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 281 SICFAWSY----SISCRLPAHSSH*HGYYARENYHYQEGF 388
           ++C  ++Y    S S   P H ++ + YY R ++ +++ +
Sbjct: 252 TLCLGYTYMPDESPSANYPYHEAYEYYYYIRSSFSWEDSY 291


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 84  ESGVISLKDKTSKVALVYGQMNEPP 158
           E+G ++ ++  + VA V G +N PP
Sbjct: 486 ETGTVNAEEVQTPVADVIGSLNHPP 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,722
Number of Sequences: 5004
Number of extensions: 36690
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)