Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G12
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.8  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 189 LLKTDSVSRINYTYNT*LYQSWQTLFCITKSKHIERLKILFDKKKQFITIHQSVL 353
           LL+ +S +      N  L  SW+ L C  +++   R+  + +    FI+   SV+
Sbjct: 726 LLEHNSNNNAKLALNESLLCSWENLLCYRRAEDDSRILTIIESWTIFISRFSSVI 780


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 104 VCPESSHA*NSRLLCPFPYDAAAGLLFGS 18
           +C +S    N +LLC   YDA   LLFG+
Sbjct: 817 ICCQSWFTGN-KLLCAVAYDAGRKLLFGT 844


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
 Frame = +3

Query: 132  NSTGTNTSPSLGRSYSIFKLLKTDSVSR----INYTYNT*LYQSWQTLF------CITKS 281
            NST    +  +G+S+  +K+L++   S     I+ T+N+  + S   ++      C+   
Sbjct: 827  NSTSVELTKHMGKSF-FYKILRSSLASFAQVFIDITHNS-KFNSCCNIYRLGYSMCMRAQ 884

Query: 282  KHIERLKILFDKKKQFIT 335
             +++R+K +F  ++ FIT
Sbjct: 885  AYLKRMKDIFIPQRMFIT 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,776
Number of Sequences: 5004
Number of extensions: 52830
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)