Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G12
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    32   0.32 
12_01_0272 + 1985348-1986036,1986142-1988020                           28   6.9  
11_01_0271 + 2039100-2041760                                           28   6.9  
12_02_0476 + 19493278-19493349,19493595-19494209,19494352-194945...    27   9.1  
07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474           27   9.1  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    27   9.1  
05_01_0478 - 3910575-3912989                                           27   9.1  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 86   ETIQDKLRHVII-TSRQFDRY*HISLTRTELFHI*ITQNRFRFTHKLHVQYLTLPIVANL 262
            +++QD LR V+I  S  F  +  ++L + E     I+QN  +F  +LH ++L LP++ ++
Sbjct: 4324 KSLQDALRIVMIGVSNHFPSFEALNLAQIESVLKDISQN-LQFVQRLHTRFLLLPMLQDV 4382

Query: 263  VLYNEK 280
               +++
Sbjct: 4383 TRSSQR 4388


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 327 IVFFYQ--TKFLISRCVYFSLYRTRFATIGKVKYCTCNLCVKRNLF*VI 187
           +VFFY   T F+ S  +   L     +T G +KYC   + +  NLF +I
Sbjct: 385 MVFFYSNATAFIASLVILILLLSNMISTQG-IKYCALQVAMILNLFGLI 432


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 327 IVFFYQ--TKFLISRCVYFSLYRTRFATIGKVKYCTCNLCVKRNLF*VI 187
           +VFFY   T F+ S  +   L     +T G +KYC   + +  NLF +I
Sbjct: 420 MVFFYSNATAFIASLVILILLLSNMISTQG-IKYCALQVAMILNLFGLI 467


>12_02_0476 +
          19493278-19493349,19493595-19494209,19494352-19494519,
          19494677-19494868,19495604-19495672,19496461-19496544
          Length = 399

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 97 LNRLTRRIRGCCVPSHTM 44
          L+ L RR RGCC P H +
Sbjct: 8  LSELARRRRGCCRPDHAV 25


>07_01_0497 + 3731842-3732386,3732487-3732808,3733232-3733474
          Length = 369

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 130 PTSDYYVAKFVLNRLTRRIRGCCVPSH 50
           P +  Y   F LNRLT R R C V +H
Sbjct: 75  PQACRYTHSFSLNRLTWRCRACKVVNH 101


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 20  SRREAL-PQHRMGRDTTTANSTR 85
           SRR AL P H+ G DTTTA  +R
Sbjct: 770 SRRAALLPDHQAGTDTTTAAPSR 792


>05_01_0478 - 3910575-3912989
          Length = 804

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 337 YIRVFYSDIIVHVRIVHMNV*NPIQTMCLKRRESEIFKNKIIIFETKFYIIWN 495
           Y+ +++S+I     +   N  NP+  + L +   E+ K+  ++  +   IIW+
Sbjct: 72  YVGIWFSNISAFTTVWVANRDNPVTDLQLNQTRLELSKDGDLVISSNASIIWS 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,987
Number of Sequences: 37544
Number of extensions: 279887
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)