Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G12
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 3.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 3.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 3.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 4.2
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 22 5.5
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.5
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 21 9.7
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 21 9.7
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 9.7
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 21 9.7
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 518 SSFRYYTSFHII*NLVSKMIILFLNIS 438
SSFR+Y ++ LV+ +IIL + IS
Sbjct: 85 SSFRFYWDLCMLLLLVANLIILPVAIS 111
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 518 SSFRYYTSFHII*NLVSKMIILFLNIS 438
SSFR+Y ++ LV+ +IIL + IS
Sbjct: 85 SSFRFYWDLCMLLLLVANLIILPVAIS 111
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 518 SSFRYYTSFHII*NLVSKMIILFLNIS 438
SSFR+Y ++ LV+ +IIL + IS
Sbjct: 85 SSFRFYWDLCMLLLLVANLIILPVAIS 111
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 44 HRMGRDTTTANSTRETIQDKLRHVIITSRQFDR 142
HR R T R + DKL +++ + Q +R
Sbjct: 301 HRGVRGTRVPGIVRSLVLDKLARIVLLNFQEER 333
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +2
Query: 44 HRMGRDTTTANSTRETIQDKLRHVIITSR 130
H M + T N+ R+T ++++ ++ +R
Sbjct: 182 HNMELEPTPGNTLRQTFENQVNRILNDAR 210
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 5.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +3
Query: 252 WQTLFCITKSKHIERL 299
W T +C+T ++ +E L
Sbjct: 143 WNTRYCLTPTERLEAL 158
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 5.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +3
Query: 252 WQTLFCITKSKHIERL 299
W T +C+T ++ +E L
Sbjct: 196 WNTRYCLTPTERLEAL 211
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 21.0 bits (42), Expect = 9.7
Identities = 5/20 (25%), Positives = 14/20 (70%)
Frame = +3
Query: 363 NCSCKNCTHECIKSYSNNVS 422
+C C + ++C+K+ ++ +S
Sbjct: 88 SCDCDDKFYDCLKNSADTIS 107
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.0 bits (42), Expect = 9.7
Identities = 5/20 (25%), Positives = 14/20 (70%)
Frame = +3
Query: 363 NCSCKNCTHECIKSYSNNVS 422
+C C + ++C+K+ ++ +S
Sbjct: 93 SCDCDDKFYDCLKNSADTIS 112
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 408 NRILYIHVYNSYMNNY 361
N Y + YN+Y NNY
Sbjct: 90 NNYNYNNNYNNYNNNY 105
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.0 bits (42), Expect = 9.7
Identities = 5/20 (25%), Positives = 14/20 (70%)
Frame = +3
Query: 363 NCSCKNCTHECIKSYSNNVS 422
+C C + ++C+K+ ++ +S
Sbjct: 93 SCDCDDKFYDCLKNSADTIS 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,233
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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