Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G11
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   1.2  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   2.1  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   4.8  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   6.3  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   6.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.3  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 163 DLCEAFHKYLMDLSFEEKLVVLKLHPDLAGQLAAQGELTRESKDEQRSAGLNNLTMEQKN 342
           ++CE F  +  D++ +  L   K H DL     A   + RES   +    +NNL   +  
Sbjct: 502 EICEKFFSFA-DVTDDPTLKDPK-HQDLVAAANAYMAMLRESYGTE----INNLLERRNE 555

Query: 343 IIDEYNQRYK 372
           ++D+YN   K
Sbjct: 556 LLDDYNNVQK 565


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 419 ILFSLAQITNGNPNFCLYL*LYSSII--FFCSMVRLFNPAERCSSLDSRVSSPCAANC 252
           +L SL    + +PN+C  + LYSS++  F     R  + A    ++   V+  CA +C
Sbjct: 41  VLISL-YFMSWHPNYCTIVYLYSSLLDAFDGWAARKLHQATNFGAILDMVTDRCATSC 97


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 271 ELTRESKDEQRSAGLNNLTMEQKNIIDEYNQRYKQKFGFPFVICARENKIQSII 432
           EL     DEQ    L  L + +K+ +  + +  K  FG    +   E  I+++I
Sbjct: 566 ELLNSGLDEQEGEKLLVLHVSEKDPVGTFTEVLKNPFGLEDALTEMEKVIKNLI 619


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +1

Query: 202 SFEEKLVVLKLHPDLAGQLAAQGELTRESKDEQRSAGLNNLTMEQKNIIDEYNQRYKQKF 381
           S+ ++L  L+ +PD   +L  QG+ T   K+    A    +    + +     +R K + 
Sbjct: 284 SYPDELTQLESNPDSFSRLDLQGDCTCIFKNRSSIASSRTMDDVVRWLFSSGKRRQKYES 343

Query: 382 GFPF 393
            +P+
Sbjct: 344 SYPY 347


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 496 LHRYQYLLLDHVHLNIELLDL*LSIVSYFLLRRLQMEIRIFVYTFD 359
           L RY  ++LD  H      D+ + ++     RR  ++I +   T D
Sbjct: 188 LSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLD 233


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 262 AQGELTRESKDEQRSAGLNNLTME 333
           ++GE  ++SK E  SAG+N+ +M+
Sbjct: 653 SKGEEPQKSKSEPPSAGINSTSMD 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,736
Number of Sequences: 5004
Number of extensions: 43974
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)