Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G11
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0213 + 15481691-15481837,15482759-15482860,15483169-154833... 40 0.001
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 1.6
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 28 4.8
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 27 6.3
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 27 6.3
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 27 8.4
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 27 8.4
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 27 8.4
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51... 27 8.4
>03_03_0213 +
15481691-15481837,15482759-15482860,15483169-15483328,
15484140-15484603
Length = 290
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 352 EYNQRYKQKFGFPFVICARENKIQSIIKGLEVRYLNARDQEVNIGIDE 495
++N RY++KFGF F+ICA ++ L+ RY N E+ I E
Sbjct: 53 DWNARYREKFGFVFMICASGRTAPEVLAELKRRYENRPIVELEIAAQE 100
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 338 FCSMVRLFNPAERCSSLDSRVSSPCAANCPAKSGC 234
FC +FNP C+S D+ ++P A + C
Sbjct: 55 FCGSCCVFNPVHNCTSTDAAAAAPAIAGDDCRMIC 89
>07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 349 DEYNQRYKQKFGFPFVICARENKIQSIIKGLEVRYLNARDQE 474
D NQ Q FG PF + RE++ S IK + L D++
Sbjct: 1038 DTQNQTQVQNFGEPFFMVIREDETLSSIKERIQKKLKVPDED 1079
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 37 ITISEVNNFGGHQFKRMFGNVVELCSDAAVQVWNKKPFSNASDL 168
+++SE+ +F F R+FG V E C DA + W S+AS L
Sbjct: 88 LSLSELEHFVDI-FLRLFGMVDEDCVDARMPAWPLGGGSDASAL 130
>05_05_0334 +
24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 319 NLTMEQKNIIDEYNQRYKQKFGFPFVICARENKIQSIIKGLE 444
N ++QK+I + KF PF+ R+ S++K L+
Sbjct: 338 NKDIDQKDIASVLTMLHVNKFEIPFIAMYRKENCPSLLKDLD 379
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +1
Query: 253 QLAAQGELTRESKDEQRSAGLNNLTMEQKNIIDEYNQRYKQKF-----GFPFVICARENK 417
Q+A Q +L +++DE A L+ M + +++R K++ + + E
Sbjct: 197 QVAIQKDLVLQTEDEDTEALLDTYIMAIGEA-EAFSERMKRELVALESANVYALMETETV 255
Query: 418 IQSIIKGLEVRYLNARDQEVNIGIDEV 498
I+ +++GLE+ + D + +GI V
Sbjct: 256 IEEVLEGLEIASICVEDFDEWLGIFNV 282
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 157 HLKKASCSKLVLLRPSII--LQHCQTSV*TDDHQSCSLPRWLFVKTC 23
HL C L P II L ++ + D+ ++ LPRWL TC
Sbjct: 501 HLHIDGCGDLSSASPEIIRALSSLKSLILEDNEKAEGLPRWLGELTC 547
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = -3
Query: 338 FCSMVRLFNPAERCSSLDSRVSSPCAANCPAKSGCNFNTTNFSSKLRSIKYL*NASHRSD 159
FC +R F+P + S C N P + G N TT+ + ++ +K +H +
Sbjct: 318 FCGCLRGFSPTSPAAWAMKDASGGCRRNVPLRCG-NTTTTDGFALVQGVKL--PDTHNA- 373
Query: 158 AFEKGFLFQTCTAASEHNSTTL 93
+ + G + C A N + L
Sbjct: 374 SVDTGITVEECRARCVANCSCL 395
>02_01_0074 +
519401-519512,519513-519548,519647-519706,519785-519877,
519968-520033,520146-520223,520300-520407,520478-520554,
520632-520706,520792-520799,520981-521098,521199-521625,
521627-521661
Length = 430
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 127 QVWNKKPFS-NASDLCEAFHKYLMDLSFEEKLVVLKLHPDLAGQLAAQGELTRESKDEQR 303
QV + +P+S + +L E+ + S ++ ++ PDL + + ++ + +EQ+
Sbjct: 258 QVDSVQPWSLDLFNLQESIEQQSSIQSSDKGESTTEVDPDLNEEFLTEEDIEQFLDEEQQ 317
Query: 304 SAGLNNLTMEQKNIIDEYNQRYK 372
A N + I E NQ++K
Sbjct: 318 EASKGNNASIDRKYIPELNQKFK 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,177
Number of Sequences: 37544
Number of extensions: 242746
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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