Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G10
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   0.86 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   4.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   6.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 0.86
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 102 TQTCSGRSSFYCLSLCASASKPILIVRNCY 191
           T    G S+F C+SL       I I RN Y
Sbjct: 393 TSVLIGWSAFLCISLVYIIMLIIFIPRNIY 422


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 104 CTERPSSEFLQPGGSI 57
           C      EFL PGGS+
Sbjct: 62  CEIYAKCEFLNPGGSV 77


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 115 EHVCVLKGPRPNSCSPGDP 59
           E VCVLK     SC P  P
Sbjct: 605 EDVCVLKTDTNQSC-PSPP 622


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 104 TNMFGKIVFLLLVALCVG 157
           TN+ G IVF +   L  G
Sbjct: 238 TNVMGMIVFCITFGLVAG 255


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 2   ITSLREQSWSFH 37
           +T LRE+ W  H
Sbjct: 361 MTQLREEGWIHH 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,738
Number of Sequences: 438
Number of extensions: 1448
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)