Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G08
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   2.4  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.3  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   4.3  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   5.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.6  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   7.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.9  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   9.9  

>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 320 LWAGGIISPYFFKNDVGQNVTVNGDRYRVMITDF 421
           +W+GGI   YF   +    VTV+GD     +TDF
Sbjct: 283 VWSGGIAYQYFESENEYGVVTVSGDSVST-LTDF 315


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 172 YFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVYVET 288
           Y  +R +  D+   C N +V K+ C I  DN  + + +T
Sbjct: 28  YCRRRKIKCDKNRPCHNCFVAKRECIIAGDNRKKRHTKT 66


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 445 MVVQLMKEKVSNHDSIAVTIDCNVLTNIVFKEIRTN 338
           MVV+ ++++V  H+   VT+ C +  N +  +I +N
Sbjct: 250 MVVEKIRKQV--HEETGVTVSCGIAANKLLAKIASN 283


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 20/57 (35%), Positives = 22/57 (38%)
 Frame = +2

Query: 362 DVGQNVTVNGDRYRVMITDFFFHQLNNHDVQDLWFQQHGATCHTACATIDLLKETFG 532
           D+ Q  T    +    I D F      H V D WF  H AT    C T   L  TFG
Sbjct: 383 DLSQKNTTQSKKLNSYIRDSF------HSVNDFWFSSH-ATNTEQCFT-KRLTATFG 431


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 136  GEWAQNKIAVDSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVY 279
            GE+ Q+ IA+ S   K +V      FC +G        +W    P VY
Sbjct: 893  GEYEQHLIAMKSTARKELVLLHPERFCPSGLT-----RLWLKERPWVY 935


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -3

Query: 418 VSNHDSIAVTIDCNVLTNIVFKEI 347
           VSN D++  ++D N+L++++  +I
Sbjct: 241 VSNIDNLGASVDLNILSHVIDNQI 264


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 17  RLNNASKLCKFILKITVYVL 76
           +LNN   +CKFI+K++V+V+
Sbjct: 374 KLNN--DICKFIMKLSVWVI 391


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 462 HRSCTSWLFN**KKKSVI 409
           HRSCT W+ N  K+K ++
Sbjct: 47  HRSCTRWVRNMDKRKGLL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,833
Number of Sequences: 5004
Number of extensions: 63811
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)