Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G08
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304...    31   0.83 
04_04_0881 + 29055724-29059197                                         29   3.3  
07_03_0057 + 12872946-12873152,12873371-12873421,12876335-128764...    28   7.7  
06_03_0774 + 24504964-24507459                                         28   7.7  

>01_01_0402 +
           3046504-3046582,3047265-3047487,3047954-3048107,
           3048253-3048355,3048554-3048738,3048972-3049051,
           3049433-3049511,3050015-3050096,3050221-3050279,
           3050379-3050684,3050825-3050989
          Length = 504

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 82  SQLVQELKPHDHLARCRCGEWAQNKIAVDSYFHKRIVFSDEA 207
           S L++ LK  + + R +   WA + IA  S+ HK+++F+ EA
Sbjct: 333 SGLIKCLKSDNRVLR-KESSWALSNIAAGSFEHKKLIFASEA 373


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 237 FNDVSIQTKVSFIAKHNSLMKIGINGNLVLGPFTASTP 124
           +N +S     SF+A   +L    ++GNL+ GP   S P
Sbjct: 135 YNSLSGPIPQSFLANSTNLQTFDVSGNLLSGPVPVSFP 172


>07_03_0057 +
           12872946-12873152,12873371-12873421,12876335-12876480,
           12876567-12876756
          Length = 197

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = -3

Query: 502 GTSCVTCCAMLLKP-QILHIMVVQLMKEKVSNHDSIAVTIDCNVLTNIVFKEIRTNDSTS 326
           GT   T C++L     + HI +  L++EK S HD     ++C+++ N   + I     ++
Sbjct: 22  GTGKTTTCSLLADAVDLRHINIGDLVREK-SLHDGWDEELECHII-NEDLESIGLPQPSN 79

Query: 325 P-*SIPLV---FLDVMTSQHTLEDYY 260
           P  ++P V     DVM     L DY+
Sbjct: 80  PVCTVPQVCDELEDVMEEGGILVDYH 105


>06_03_0774 + 24504964-24507459
          Length = 831

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 575 LEANSRVQNIKLYGYQTFPSINQLWHKLCDMLRHVVETTDPAHHGCSID 429
           LE   R   +     +T PS+  + H++  ML  VVE     H   SID
Sbjct: 765 LERVERFVRVAFLCIETNPSLRPMMHQVVQMLEGVVEVHAMPHLPSSID 813


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,957
Number of Sequences: 37544
Number of extensions: 393342
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)