Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G08
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    31   0.56 
U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical p...    29   2.3  
U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   3.9  
Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    28   6.9  
AF106575-3|AAC78173.2|  287|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    28   6.9  
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    27   9.1  
AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 178 HKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVYVETSLHPEKLKV 315
           H++++F+DE  FC+      QN  +++   P   V+ + +P+ + V
Sbjct: 213 HRKVLFTDEKIFCIEQSFNTQNDRVYAKTQPNSRVQRTGYPKGIMV 258


>U39855-4|AAA81083.1|  290|Caenorhabditis elegans Hypothetical
           protein F18G5.5 protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 642 SSDVV*SGGPIFDDFFQHLWHDLGGQFTGPKHKTIRLPNVSFNK 511
           ++ V+ S   I D  F  +   L G+++  K KT+RL N+S N+
Sbjct: 141 TTQVIVSNSTIEDVEFPSVDEILNGRYSSLKSKTLRLDNISLNR 184


>Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical
           protein T26E4.16 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 308 SFSGCNDVSTYT*GLLSLQILQFCLMTY 225
           S SGC+ +STY   + S  +LQ+CL+TY
Sbjct: 253 SKSGCDILSTYQ-KIYSSALLQYCLVTY 279


>U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical
           protein ZC487.1b protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 VDSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVYV-ETSL 294
           VD Y+       D  H CL  + +++ CSI+S  NP++ V E SL
Sbjct: 8   VDVYYQVEPPIRDHDH-CLLMHKVRELCSIFSSKNPKLVVFERSL 51


>U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical
           protein ZC487.1a protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 VDSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVYV-ETSL 294
           VD Y+       D  H CL  + +++ CSI+S  NP++ V E SL
Sbjct: 8   VDVYYQVEPPIRDHDH-CLLMHKVRELCSIFSSKNPKLVVFERSL 51


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 142  WAQNKIAVDSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNP 270
            W+Q   +V S F  RIV S + H   NG       ++ + N+P
Sbjct: 1230 WSQASFSVPSDFSSRIVISADGHLITNGKEGSAAITVRNVNSP 1272


>Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical
           protein T13F3.5 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 82  SQLVQELKPHDHLAR---CRCGEWAQNKIAVDSYFHKRIVFSDEAHFCLNGYVIK 237
           +Q++++L+P   L     C+C + + +K+    Y     + S EAH  LNG  IK
Sbjct: 19  NQILEKLEPIYQLTSRKVCKCLKTSVDKLGTHFYSITFHILSREAHIQLNGTEIK 73


>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 574 WRPIHGSKT*NYTVTKRFLQ*INCGTSCVTCCAMLLKPQILHIMVVQLMKEKVSNHDSIA 395
           W PI G    + TV   FL  + CG  C     +LLK         Q+++ ++ N  +I 
Sbjct: 203 WSPIAGMTIMSLTVLASFLVIVICGYKCYLRIKLLLKNGGTSSARSQVLQTQLFNALAIQ 262

Query: 394 VTIDCNVL-TNIVFK 353
             I   +L T +V K
Sbjct: 263 TLIPILLLHTPVVLK 277


>AF106575-3|AAC78173.2|  287|Caenorhabditis elegans Hypothetical
           protein K04F1.14a protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 199 DEAHFCLNGYVIKQNCSIWSDNNPQVYVETSLHPEKL 309
           D  H C N YVI+Q+  ++ +          LHP  L
Sbjct: 29  DSTHLCENFYVIQQDLDVYGNARDCGCSNVRLHPSSL 65


>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 199 DEAHFCLNGYVIKQNCSIWSDNNPQVYVETSLHPEKL 309
           D  H C N YVI+Q+  ++ +          LHP  L
Sbjct: 144 DSTHLCENFYVIQQDLDVYGNARDCGCSNVRLHPSSL 180


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 142 WAQNKIAVDSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNP 270
           W+Q   +V S F  RIV S + H   NG       ++ + N+P
Sbjct: 796 WSQASFSVRSDFSSRIVISADGHLRTNGKEGSAAITVRNVNSP 838


>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 166 DSYFHKRIVFSDEAHFCLNGYVIKQNCSIWSDNNPQVYV 282
           D+Y +      DE H     Y  +QN  +WSDN  ++ +
Sbjct: 411 DAYIYSHFESEDEFHGVCE-YARQQNILLWSDNQQKLVI 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,161
Number of Sequences: 27780
Number of extensions: 365831
Number of successful extensions: 884
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)