Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G07
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 361 e-101
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 361 e-101
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 361 e-101
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 158 8e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 144 1e-35
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 111 1e-25
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 45 9e-06
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 8e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 39 6e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 0.004
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.038
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.3
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.4
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 5.8
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 7.6
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 25 7.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 361 bits (888), Expect = e-101
Identities = 167/220 (75%), Positives = 193/220 (87%)
Frame = +2
Query: 2 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
KLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTG 121
Query: 182 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI 361
EFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+
Sbjct: 122 EFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKV 179
Query: 362 GYNPAAVAFVPISGWHGDXMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARP 541
G+NP V FVP+SG+ GD M+EP+T MPW++GW E K G +GK L+EA+D+I PPARP
Sbjct: 180 GFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 542 TDKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVVVFA 661
TDK LRLPLQDVY+IGGIGTVPVGRVETG++KPG +V FA
Sbjct: 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 361 bits (887), Expect = e-101
Identities = 166/220 (75%), Positives = 193/220 (87%)
Frame = +2
Query: 2 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
KLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
Query: 182 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI 361
EFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+
Sbjct: 122 EFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKV 179
Query: 362 GYNPAAVAFVPISGWHGDXMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARP 541
G+NP V FVP+SG+ GD M+EP+T MPW++GW E K G +GK L+EA+D+I PPARP
Sbjct: 180 GFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 542 TDKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVVVFA 661
TDK LRLPLQDVY+IGGIGTVPVGRVETG++KPG +V FA
Sbjct: 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 361 bits (887), Expect = e-101
Identities = 166/220 (75%), Positives = 193/220 (87%)
Frame = +2
Query: 2 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
KLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTG
Sbjct: 62 KLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
Query: 182 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI 361
EFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+
Sbjct: 122 EFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKV 179
Query: 362 GYNPAAVAFVPISGWHGDXMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARP 541
G+NP V FVP+SG+ GD M+EP+T MPW++GW E K G +GK L+EA+D+I PPARP
Sbjct: 180 GFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 542 TDKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVVVFA 661
TDK LRLPLQDVY+IGGIGTVPVGRVETG++KPG +V FA
Sbjct: 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFA 279
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 158 bits (383), Expect = 8e-40
Identities = 94/216 (43%), Positives = 124/216 (57%), Gaps = 3/216 (1%)
Frame = +2
Query: 14 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 193
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 236 ERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFER 295
Query: 194 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYN 370
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 296 GFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFK 353
Query: 371 PAAVAFVPISGWHGDXML--EPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPT 544
+ V FVPIS G ++ + S W+K G L+ ALD ++PP +P
Sbjct: 354 TSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKPY 401
Query: 545 DKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVV 652
K LRL + DVY TV GRVE G ++ V+
Sbjct: 402 RKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVL 436
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 144 bits (348), Expect = 1e-35
Identities = 77/218 (35%), Positives = 128/218 (58%), Gaps = 4/218 (1%)
Frame = +2
Query: 14 ERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 193
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEA
Sbjct: 297 EREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEA 356
Query: 194 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI-GYN 370
G + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN
Sbjct: 357 GFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN 416
Query: 371 PAA-VAFVPISGWHGDXMLE--PSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARP 541
V ++P+S + G + + S+ PW+ +G L+E LD++ R
Sbjct: 417 SKTDVKYMPVSAYTGQNVKDRVDSSVCPWY------------QGPSLLEYLDSMTHLERK 464
Query: 542 TDKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVVV 655
+ +P+ Y+ +GT+ G++E G +K + V+
Sbjct: 465 VNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVL 500
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 111 bits (266), Expect = 1e-25
Identities = 76/218 (34%), Positives = 111/218 (50%), Gaps = 1/218 (0%)
Frame = +2
Query: 2 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
K E+ RGITI A ++ET + +D PGH D+IKNMITG + D A+++V+A G
Sbjct: 93 KAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDG 152
Query: 182 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI 361
+ QTREH LLA +GVKQ++V +NK+D EP E ++ E+ + +
Sbjct: 153 QMP-------QTREHLLLARQVGVKQIVVYINKVDMVEP----DMIELVEMEMRELLSEY 201
Query: 362 GYNPAAVAFVPISGWHGDXMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDA-ILPPAR 538
G++ V G + + P + G L+EA+D+ I P R
Sbjct: 202 GFDGDNTPIV-----SGSALCALEGREP---------EIGLNSITKLMEAVDSYITLPER 247
Query: 539 PTDKALRLPLQDVYEIGGIGTVPVGRVETGILKPGTVV 652
TD + ++DV+ I G GTV GRVE G LK G +
Sbjct: 248 KTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEI 285
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 45.2 bits (102), Expect = 9e-06
Identities = 34/94 (36%), Positives = 47/94 (50%)
Frame = +2
Query: 5 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 184
L AER+RGITI+ A F + +ID PGH DF + + D AV I+ +
Sbjct: 71 LPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----D 125
Query: 185 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 286
AG+ QT+ A G+ ++I VNKMD
Sbjct: 126 GSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 74 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 253
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 254 KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 352
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 KLKAERERGITIDIA----LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 169
KL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V
Sbjct: 97 KLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVD 156
Query: 170 AGTG 181
A G
Sbjct: 157 ASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 GITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
GIT I + F+ G ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.038
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 71 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 226
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 71 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 181
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 83 IIDAPGHRDFIKNMITGTSQADCAVLIV 166
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 KLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 121
K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 61 KVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 71 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 166
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 71 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 166
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 86 IDAPGHRDFIKNMITGTSQADCAVLIV 166
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 288 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 389
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 666 SRAKTTTVPGFRIPVSTLPTGTVPIPPISYTSC 568
S +T TV + VST TGTV +P S +C
Sbjct: 92 SAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 678 SSDVSRAKTTTVPGFRIPVSTLPTGTVPIPPISYTS 571
S+D S + TT+ P P+STLP P+ IS +S
Sbjct: 141 SADNSSSSTTSNPNVAPPISTLPD---PVATISSSS 173
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 580 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 413
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 157 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 50
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 290 TEPPYSESRFEEIKKEVSSYIKK 358
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 KAERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 130
K E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 16 KYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 678 SSDVSRAKTTTVPGFRIPVSTLPTGTVPIPPISYTS 571
SS +S T TVP P ST T ++PIPP S +S
Sbjct: 127 SSSLSTPITPTVP----PTSTSST-SIPIPPTSTSS 157
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 678 SSDVSRAKTTTVPGFRIPVSTLPTGTVPIPPISYTS 571
SS +S T TVP P ST T ++PIPP S +S
Sbjct: 184 SSSLSTPITPTVP----PTSTSST-SIPIPPTSTSS 214
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 678 SSDVSRAKTTTVPGFRIPVSTLPTGTVPIPPISYTS 571
SS +S T TVP P ST T ++PIPP S +S
Sbjct: 240 SSSLSTPITPTVP----PTSTSST-SIPIPPTSTSS 270
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 187 EFTSTSGDNKHGAVSLRRSSDHVLDE 110
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,508
Number of Sequences: 5004
Number of extensions: 63986
Number of successful extensions: 285
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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