Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_G06
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 39 0.004
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 38 0.008
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 31 0.55
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719... 30 1.7
09_02_0168 - 5253588-5254688 29 2.2
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 29 3.0
10_08_0303 - 16638379-16640199 29 3.0
03_01_0298 + 2318836-2319051,2321238-2323106 28 5.2
11_06_0168 + 20868696-20870072 28 6.8
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 27 9.0
10_08_0304 - 16640937-16642877 27 9.0
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 9.0
04_04_0463 - 25397837-25399693,25402136-25402405 27 9.0
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 27 9.0
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 9.0
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 543 VFVLDTSGSMSGRTMEQLKEAMYT 614
VF++DTSGSM G+ +E +K AMYT
Sbjct: 335 VFIIDTSGSMQGKPLESVKNAMYT 358
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3
Query: 534 KYVVFVLDTSGSMSGRTMEQLKEAMYT 614
K VVFV+DTSGSM G +E +K AM T
Sbjct: 333 KAVVFVIDTSGSMQGHPLENVKNAMST 359
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 90 LTYEEMLVRRN-DVYQHV--VNLHPGSLVPKF-TVTVHIKETANISELRVPEIRTGNEV 254
+ YE + RR+ D +H +HPG L F TV ++T N + RVP++ GN +
Sbjct: 102 MNYENCVQRRDKDQGEHKRGAEVHPGYLPQAFQTVEEWGEKTGNRNNTRVPDVMAGNRI 160
>12_01_0788 +
7192937-7192994,7193074-7193160,7193242-7193307,
7193447-7193555,7194522-7194785,7194919-7195006,
7195085-7195708,7196017-7196140,7196195-7196337,
7196434-7196649,7196781-7196873,7196952-7197032,
7197120-7197504,7197599-7197636
Length = 791
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 54 FNVEAASKVIFNLTYEEMLVRRNDVYQHVVNLHPGSLV--PKFTVTVHIKETANISELRV 227
F E ++ + T+E + R+DV ++ + PG V P+ + + +T ++S
Sbjct: 404 FQEEEGGDIVLDDTFEANTLSRDDVIPEILQMAPGQKVRPPRNSQPSNCPQTQHVSTSNS 463
Query: 228 PEIRTGNEVDATKDDAQMSNVIIQRE 305
++R N+ + ++ ++ RE
Sbjct: 464 KKVRGKNKSKVERRPIGENHELLSRE 489
>09_02_0168 - 5253588-5254688
Length = 366
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +3
Query: 357 LMHVYAEKSKESATGENAGEGVLGQFVVQYDVDRP----KDGQILV-----NDGYFVHFF 509
++ + K+ E ATGE E + Q VVQ +RP K+ + +G VH
Sbjct: 197 MLSLMKRKALEVATGEVTTEEIGSQEVVQEVAERPAAKEKEPEFAAFGAREEEGSEVH-- 254
Query: 510 APDLPPLNKYVVFVLDTSGSMSGRTMEQLKEAM 608
+P L + V++ +G + G E++KE++
Sbjct: 255 SPQEEQLEEMPADVMEGNGGLGGGRQERIKESL 287
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +3
Query: 126 VYQHVVNLHPGSLVPKFTVTVHIKETANISELRVPEIRTGNEVDATKDDAQMSNVIIQRE 305
++QH +N +VP VT+ A + LR+ E RTG + A +++V Q +
Sbjct: 172 IFQHPLNDKIPKMVPPSPVTLLEPPVAGVKRLRM-ENRTG-DTSAVAGTELLASVSDQLK 229
Query: 306 GTSAVITFSPDLEEQKRLMHVYAEKSKESATG 401
SA S E +RL+ A + + + G
Sbjct: 230 DLSAAPPASAG-ENNQRLVRPMASSASDKSKG 260
>10_08_0303 - 16638379-16640199
Length = 606
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 540 VVFVLDTSGSMSGRTMEQLKEAM 608
+V VLD SGSM+GR + +K+AM
Sbjct: 145 LVTVLDVSGSMAGRKLALVKKAM 167
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 540 VVFVLDTSGSMSGRTMEQLKEAM 608
+V VLD SGSMSG + LK AM
Sbjct: 248 LVTVLDVSGSMSGIKLSLLKRAM 270
>11_06_0168 + 20868696-20870072
Length = 458
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 253 TSFPVLISGTRNSEIFAVSLICTVTVNL 170
T FP L+S T+N+ IF V + V +
Sbjct: 338 TGFPALVSNTQNTRIFRVDTVAKKLVQI 365
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 152 M*INHVLVNIITADQHFFVCQIEYYFRSGFNIES 51
M I+ VN I QHF + +Y+ S FN +S
Sbjct: 742 MSIHTAYVNAIRGAQHFIYIENQYFIGSSFNWDS 775
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 540 VVFVLDTSGSMSGRTMEQLKEAM 608
+V VLD SGSM G + LK+AM
Sbjct: 176 LVTVLDVSGSMVGNKLALLKQAM 198
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 359 DARICGEIERICYRGKCGRRCFRSICCTI 445
D ++C + E+ R +CG C RS C +
Sbjct: 268 DQKMCSDQEKCLRRSECGPYCPRSQCAPV 296
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 540 VVFVLDTSGSMSGRTMEQLKEAM 608
+V VLD SGSM+G + LK AM
Sbjct: 276 LVTVLDVSGSMAGTKLALLKRAM 298
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 231 EIRTGNEVDATKDDAQMSNVIIQREGTSAV 320
E TGN+++ T D+ Q ++ ++EGT A+
Sbjct: 474 ERATGNQLEPTGDEDQEGMILDKKEGTVAI 503
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 540 VVFVLDTSGSMSGRTMEQLKEAM 608
+V VLD SGSM+G + LK AM
Sbjct: 179 LVTVLDVSGSMAGTKLALLKRAM 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,597
Number of Sequences: 37544
Number of extensions: 343765
Number of successful extensions: 889
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -