Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G05
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    30   0.28 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.5  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   7.9  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 312 LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLP 491
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L 
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485

Query: 492 APKVVWSHNAKPLSGG 539
                W    + L  G
Sbjct: 486 EKNEEWKSVKRSLQPG 501


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 241 TETLKTVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 381
           T +  T+S ++  P +S FSS   S K+ ++  +  +  S+   STL
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 300 FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 470
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 471 C 473
           C
Sbjct: 161 C 161


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 135 SKDMMAKAGDVTMIYCMYGSNPLAHPNYFKNGKDVNGNP 251
           S   + K   +T+      S   A   YF  G D NGNP
Sbjct: 181 SASTIVKGRTITLALISRRSKQRAGTRYFTRGLDENGNP 219


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 270 HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 407
           +N  SG  L   TT+P DE   ++T +VD    +    SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 543 PCHRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPF 427
           P   L+ + YG RRP  L+  SP +   +   +S    F
Sbjct: 27  PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,991
Number of Sequences: 5004
Number of extensions: 51305
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)