Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_G01
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.00 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    26   4.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   5.3  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 411 SESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGV 584
           ++  S  P +S R++G S     P   S +    P SRV++     S SK S SPS V
Sbjct: 217 NDKPSASPRISVRSLGNSSVVRPPTRTSTT---RPLSRVNVTNASGSISKNSTSPSKV 271


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/115 (24%), Positives = 44/115 (38%)
 Frame = +3

Query: 264 SRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLS 443
           S  T++ + +++   +  +   I  S    RTS S+  +  S       S S S  P+ S
Sbjct: 112 STCTISTSSLSYSGTI--SSTSIAPSMIGTRTS-SSYFITSSSSTPSSSSSSSSSSPSSS 168

Query: 444 PRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAREEKFTA 608
                 S   S+ +  S     +  S         S SK SASPS      KF++
Sbjct: 169 SSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSS 223


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 297 FMMPVVKNDWDIYNSQRSRRTSESAEKV 380
           F+  V++N W +Y S  S R  E+ EK+
Sbjct: 280 FVQFVLENLWAVYESAVSNRNLENIEKI 307


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 474 SAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSAS 572
           S P MR L     P+S  S +GV D+  +G++S
Sbjct: 4   STPPMRGLCTPSTPESPGSFKGVIDASLEGNSS 36


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 300 MMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSP 446
           ++P ++  W      + +  SESA+   +SG + R  S+   + P   P
Sbjct: 480 LIPTIRETWTRKGITQKQHYSESADPTAISGMKRRAHSDRVFDFPPCDP 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,702
Number of Sequences: 5004
Number of extensions: 40188
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)