Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F24
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    28   1.0  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.1  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   9.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.4  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   9.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.4  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 94  DDNKDDFNSVRNYTNILRSSRDNKKF*HLENSSQPFLRRIRIYFER 231
           +  KDDF++ +NYT  L  S +  +    E S   + +  R++ E+
Sbjct: 246 NSKKDDFSTFKNYTPYLNDSSEAWEKESYEKSPSVYEKTFRLFSEK 291


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -3

Query: 561 EIHFYNLSSDYQINDYNLFITYHFELSKRSIVSLIHHYVETLFS*L*KDFAASKASIINL 382
           +I FY L + +Q +  N     HF  + +   + +HH  +   S   KD       ++++
Sbjct: 284 DITFYLLMTFWQFSSDN----NHFYYNTKLFAAKVHHLFDDPTSFQSKDGGFVCMLLLSM 339

Query: 381 SSQGLTSKKNAPHFNDSEQYEFITFPLQQ 295
           +   L S    P F   E ++  T+P  Q
Sbjct: 340 AMGSLFSYIRHPEFLSDENHDRWTYPGSQ 368


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 61  SLIIAYKQYNGDDNKDDFNSVRNY 132
           SL  ++K+ N D N D +NS  NY
Sbjct: 219 SLKASFKRGNIDYNLDSYNSTNNY 242


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 509 YLSHITLNYLNVLLF 465
           ++SH+T NY N LLF
Sbjct: 804 FVSHVTANYSNQLLF 818


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 308 NVMNSYCSESLKCGAFFFDV 367
           N++N +CS SL   A+ FDV
Sbjct: 185 NLLNIFCSNSLVEKAYLFDV 204


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 555  HFYNLSSDYQINDYNLFITYHFELSKR 475
            H+ +LS+ Y I   N+F++  F+L++R
Sbjct: 2320 HWESLSNTYWIVQLNIFLSRCFDLNQR 2346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,271
Number of Sequences: 5004
Number of extensions: 48203
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)