Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F23
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    29   0.26 
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   1.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   2.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   2.4  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    25   4.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    24   9.6  
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    24   9.6  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    24   9.6  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
 Frame = -2

Query: 431 TPWDGVEGETGRAKAAQAVQHGARLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVAT 252
           T W  ++      K    +  G+RL         +    E K   +Q+  +  +AE +  
Sbjct: 220 TVWSPLKSGILTGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQLDQVRQISKIAEQIGA 279

Query: 251 DP---VLAWTKAKELYSS--LSQPEPENQARPAXXXXXXXXXTRETARKFVHLVNYTHTD 87
            P    LAWT      S+  L   +PE               T E  +K   ++N+T  +
Sbjct: 280 TPSQLALAWTLKNPYVSTTILGASKPEQIVENVKAVEFIDKLTPEILKKIDEILNFTPLE 339

Query: 86  L 84
           +
Sbjct: 340 I 340


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 173 GGLGSRVQVGLETSIAPWLLSKLALGPLPPFL 268
           GGL  R    ++T  A W+LS L L    PF+
Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKLLDALPFI 280


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 137  RETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLK 12
            ++T  KFV + N+ HTDL   +   +T     +SF    L++
Sbjct: 916  KKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVE 957


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 121  NSCISSTTPTRTCLETYAKA*RLLPSTCLL 32
            NSC S+T+ TR C + Y+   R+  + C L
Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFCCL 1270


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 66  LAYVSRQVRVGVVDEMHEFPRGFPGQQHDQLLERGGAGLVLG--FRL 200
           L Y+  ++R     +  EF RG+ GQQ + LL      L  G  FRL
Sbjct: 50  LGYLFERLRSFTSLKETEFQRGYAGQQSEGLLTHHSKSLKSGRPFRL 96


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 220 SYTRL*ANLNPRTKPAPPRSRSWSCC 143
           +YT +  N  P+T+  P RS  W CC
Sbjct: 293 TYTPMQRN-PPKTELEPIRSMRWCCC 317


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 285 YTRLCCRNGGNGP 247
           Y RLC R  GNGP
Sbjct: 452 YKRLCFRTKGNGP 464


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 362 RLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAK 222
           RL  K Q  +T+  + EAK +KE +N+   + +   +D V  +T +K
Sbjct: 3   RLNVKEQEHLTQ--VLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSK 47


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 FSGSGWLRDEYSSLAFVQAS 243
           FSG  WLRD   SL+ V  S
Sbjct: 42  FSGQAWLRDTIPSLSNVVES 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,993
Number of Sequences: 5004
Number of extensions: 28788
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)