Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F23
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 1.3
11_05_0091 - 18982390-18982948,18983088-18983173 29 1.8
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 29 1.8
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 29 2.3
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 3.1
09_06_0280 + 22010270-22011407,22011890-22013097 28 4.1
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 5.4
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 27 5.4
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 27 7.2
09_04_0032 - 13953323-13955269 27 7.2
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 27 9.5
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144... 27 9.5
05_04_0223 - 19192411-19192951,19193363-19193388 27 9.5
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 27 9.5
01_05_0170 - 18888849-18889880 27 9.5
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 196 LNPRTKPAPPRSRSW 152
LNPR PAPP +R+W
Sbjct: 77 LNPRATPAPPSARTW 91
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 199 NLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTP 95
+L P P+P + CC G+ NS ++S TP
Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 3 SLPLEKRVGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 149
S ++ VG HVLG Q A +R+ V+DE E RGF Q H
Sbjct: 775 STGVQVAVGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -2
Query: 341 RRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPE 186
RRI R E K +KEQIN+L ++ T+ ++ K L LSQ E E
Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERE 431
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 410 GETGRAKAAQAVQHGARLKRKLQRRITRQALAEA 309
G+ + QAV HG +LK +L R +TR+ E+
Sbjct: 640 GQVYHYPSFQAVTHGDKLKHELSRDLTRETAWES 673
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 163 SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 71
+ +WSC PG+ R ++CIS+ + + Y
Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 193 NPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 80
+PR P PP + SW C P P G +SS TCL
Sbjct: 288 SPRNGPLPPNAPSW-CEAPFDPEG--LLSSLMAIVTCL 322
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 238 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 80
+G K Y+ + + TKP +R WS C RGN S+ TR L
Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 413 EGETGRAKAAQAVQHGARLKRKLQRRITRQALAE-AKAIKEQINILVYVAEMVATDPVLA 237
E + A AA A Q A + L R +TR ALAE A+ +L Y +A+
Sbjct: 3 ETSSPAAAAAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASPAASV 62
Query: 236 WTKAKELYSSLSQ 198
E+ S +++
Sbjct: 63 RKLVMEILSHINK 75
>09_04_0032 - 13953323-13955269
Length = 648
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 107 RDARISSRFPWSATRPTPRAWRG 175
RDA + R PW+++ +P WRG
Sbjct: 40 RDA-VGPRLPWASSSSSPCGWRG 61
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 219 AILVSKPT*TREPSPPRHARGVGRVADQGNREEIR-ASRQLHPHGLA*KR 73
AI+V P+ R+PSP RG G A G R + +SR+L G + K+
Sbjct: 264 AIIV--PSRYRQPSPVGGRRGAGSPAPGGRRASLSPSSRRLSGEGSSKKK 311
>07_03_0922 -
22612773-22613321,22613616-22614189,22614389-22614466,
22615455-22615504,22616215-22616448
Length = 494
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -1
Query: 228 SQGAILVSKPT*TREPSPPRHARGVGRVADQGNREEIRASRQLHPHGLA*KRTPR 64
S+G V+ T + +PP RGVGR G + RA+ Q KRT R
Sbjct: 443 SRGGSSVTANVKTMQRNPPAKKRGVGRPPKNGQK---RAAAQQDSPNKGRKRTRR 494
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 137 WSATRPTPRAWRGGLGS-RVQVGLETSIAPW 226
W RP PRA RGG R QV APW
Sbjct: 153 WQGRRPAPRARRGGTPRWRRQVASRDG-APW 182
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 238 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPT 92
+G K Y + P TKP +R WS C RGN SS T
Sbjct: 105 MGDKDMDYLAIIEYHKP-TKPRVRHTRPWSSCTKSSNRGNFHPSSILQT 152
>01_05_0170 - 18888849-18889880
Length = 343
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 181 WFSGSGWLRDEYS-SLAFVQAST 246
W S WL DEYS +L F ST
Sbjct: 49 WIMASRWLEDEYSENLVFYSLST 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,329
Number of Sequences: 37544
Number of extensions: 249307
Number of successful extensions: 867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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