Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F22
(629 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 249 5e-65
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 183 4e-45
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 171 9e-42
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 166 3e-40
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 160 3e-38
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 152 8e-36
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 148 9e-35
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 142 8e-33
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 141 1e-32
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 128 1e-28
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 122 5e-27
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 116 4e-25
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 103 5e-21
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 93 4e-18
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 88 1e-16
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 74 3e-12
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 53 5e-06
UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1; Staphy... 46 6e-04
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 45 0.001
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 44 0.004
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 43 0.007
UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1; Sulfol... 43 0.007
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 42 0.016
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 41 0.028
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 39 0.086
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.11
UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria n... 37 0.46
UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;... 36 0.61
UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3; Bacill... 36 1.1
UniRef50_Q01GC3 Cluster: Predicted E3 ubiquitin ligase; n=1; Ost... 36 1.1
UniRef50_Q8W9S9 Cluster: Ribosomal protein L5; n=1; Mesostigma v... 34 2.4
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 33 4.3
UniRef50_Q752I3 Cluster: AFR592Wp; n=2; Saccharomycetaceae|Rep: ... 33 4.3
UniRef50_Q9KD05 Cluster: BH1414 protein; n=1; Bacillus haloduran... 33 5.7
UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putati... 33 5.7
UniRef50_A6RLJ5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner... 33 7.5
UniRef50_Q2PZW7 Cluster: Major capsid protein; n=1; Lymphocystis... 32 9.9
UniRef50_A0DQB8 Cluster: Chromosome undetermined scaffold_6, who... 32 9.9
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 249 bits (609), Expect = 5e-65
Identities = 123/199 (61%), Positives = 147/199 (73%), Gaps = 1/199 (0%)
Frame = +1
Query: 19 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 198
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RP+VRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 199 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 378
YHTKVRAGRGF+L E+R +G++ ARTIGI+VDPRRRNKS ESLQ NVQRLKEYR++LI
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 379 LFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGA 555
LFP K KG+++ EE KLATQL GP+MPV+ K AR ITE+EKNFKA+ LR A
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMA 185
Query: 556 RSIAKLVGIRAKRLKDAAE 612
R+ A+L GIRAKR K+AAE
Sbjct: 186 RANARLFGIRAKRAKEAAE 204
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 183 bits (445), Expect = 4e-45
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 373 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
L++FP + ++V G++ EE ATQ++G MP+ +T D K FKAY +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181
Query: 550 GARSIAKLVGIRAKRLKDA 606
R+ A+ G RAKR +A
Sbjct: 182 LERTNARHAGARAKRAAEA 200
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 171 bits (417), Expect = 9e-42
Identities = 87/201 (43%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
+RY+TK+R+GRGFT+ E++A+GL +AR++GI VD RRRNKS ESL++NV+R+K Y+AR
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQAR 122
Query: 373 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRG 552
L++ PK K K + + A + ++P+ R IT +EK F AY+ LR
Sbjct: 123 LVVIPKLTKKNKDKKVDLSNVEAVRQVQSVLPLPAGTEAEKPRAITSEEKEFNAYETLRK 182
Query: 553 ARSIAKLVG-IRAKRLKDAAE 612
AR + G ++A+ K E
Sbjct: 183 ARGTHRAAGKVKARIAKKEEE 203
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 166 bits (404), Expect = 3e-40
Identities = 91/197 (46%), Positives = 119/197 (60%), Gaps = 1/197 (0%)
Frame = +1
Query: 7 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 186
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALRAKKSRQLAPKPTEL-LRPLVHC 59
Query: 187 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 366
P+ RY +KVRAGRGFT +E++ +G++ +AR+ G+AVDPRRRN+ ES+ N+QRL EY+
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYK 119
Query: 367 ARLILFPKGK-KVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQY 543
+RLI P K KVLK + + L V+ K A + E+EK F+A+
Sbjct: 120 SRLIFLPDSKNKVLKIDDGKN-----------LNVVKVVPGKVKALKVGEEEKKFEAFVT 168
Query: 544 LRGARSIAKLVGIRAKR 594
LR AR K GIR KR
Sbjct: 169 LRRARCDEKFAGIRMKR 185
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 160 bits (388), Expect = 3e-38
Identities = 95/216 (43%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Frame = +1
Query: 7 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXL 168
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 169 RPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQ 348
RP V CPTVRY+ K R GRGF+L E++A+G+ P +ARTIGI VD RR+NKS E + INVQ
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQ 130
Query: 349 RLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRG----PLMPVQQTAPKSVARPITE 513
RLK Y ++L+LFP KK KG+A EEE K ATQ R + T + R +TE
Sbjct: 131 RLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRYGTAAVGGLVTPAREAPRKVTE 190
Query: 514 DEKNFKAYQYLRGARSIAKLVGIRAKRL--KDAAEN 615
+E K Y++L+ S + R +R K+A EN
Sbjct: 191 EESTKKMYKFLKKNHSAVRFFRARNRRAARKEAKEN 226
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 152 bits (368), Expect = 8e-36
Identities = 86/193 (44%), Positives = 118/193 (61%)
Frame = +1
Query: 34 NGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 213
N HF K WQ V+ F+Q ++ R+Q+R+ LRPVVR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 214 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFPKG 393
RAGRGFTL E++A G+ P +ARTIGI+VD RR+NKS E+ NV RL+EY+++L++F K
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKK 129
Query: 394 KKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKL 573
K + + E+ AT PV+Q AP+S R + E+ AY+ LR AR+ K
Sbjct: 130 TKASEVASFEQVDVSAT------FPVEQPAPESGLRAVEVPEQT--AYRTLRLARNEKKY 181
Query: 574 VGIRAKRLKDAAE 612
GIR KR K+ AE
Sbjct: 182 KGIREKRAKEKAE 194
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 148 bits (359), Expect = 9e-35
Identities = 90/207 (43%), Positives = 115/207 (55%), Gaps = 17/207 (8%)
Frame = +1
Query: 43 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 222
FHKDWQR V+ F+QP R+HRR++ R+ LRPVVRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 223 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGK-- 396
RGFTL E++ +G+ ART+GIAVD RR N S ESL NV RLK+Y+ARLILFP+
Sbjct: 90 RGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPRKSGQ 149
Query: 397 -KVLKGEANEEERKLA-----------TQLRGPLMPVQQTAPKSVARPITEDE---KNFK 531
K L A+E A T G + P++ + + DE
Sbjct: 150 FKKLDSSADEVNAAKAAFAAEGKTEGYTTKLGAIFPIKNISAAEAVTEVKRDELPKGEEA 209
Query: 532 AYQYLRGARSIAKLVGIRAKRLKDAAE 612
AY+ LR RS A+ GIR KR K AE
Sbjct: 210 AYRRLRETRSEARYKGIREKRAKAKAE 236
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 142 bits (343), Expect = 8e-33
Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
K N +PN H K W RFVKT++NQPA + RR+Q R LRPVVR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
++Y++ + GRGF+L E++ +GLN +FART+GI+VD RRRN + E L NV+RLK Y ++
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSK 120
Query: 373 LILFPK--GKK---VLKGEANEEERKLATQLRGP-LMPVQQTAPKSVARPITEDEKNFKA 534
L+L+P+ GK V+K NE Q P ++ Q+T + A I+++ +
Sbjct: 121 LVLYPRVAGKPKNGVVKDSTNEVVAHPVAQNTNPEVLTFQRTPKREKATVISKELRAKNV 180
Query: 535 YQYLRGARSIAKLVGIRAKRLKDAAE 612
Y+ LR AK VG++ KR K A E
Sbjct: 181 YRRLRQEWYNAKFVGVKEKR-KQAKE 205
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 141 bits (342), Expect = 1e-32
Identities = 83/205 (40%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +1
Query: 19 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 198
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRP+V PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 199 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 378
Y+ K R GRGFTL E+ A G+N A +IGIAVD RR + S E+ QINV RLK+Y ++
Sbjct: 63 YNMKTRLGRGFTLEELSACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIV 122
Query: 379 LFP-KGKKVLKG-------EANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKA 534
L P KGKK KG A EE + L P++ IT +E+ F+A
Sbjct: 123 LQPRKGKKTKKGFAGIPNDSAREEFKALKNVSHEKAFPIKAQTLAVKTHVITPEERKFRA 182
Query: 535 YQYLRGARSIAKLVGIRAKRLKDAA 609
+ LR AK G +A + K +A
Sbjct: 183 FSTLRKQFIEAKNFGKKATKAKASA 207
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 128 bits (309), Expect = 1e-28
Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Frame = +1
Query: 7 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 186
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 187 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 366
P+ RY+ K+R GRGFTL+E++ +GL AR++G+AVD RR NK ESL +NV RLK Y
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYL 119
Query: 367 ARLILFPKGKKVLKGEA-------NEEERKLA--TQLRGPLMPVQQTAPKSVARPITEDE 519
++L+LFP+ K KG A E+ R LA Q +MPV Q K R +TE +
Sbjct: 120 SKLVLFPRKKHAKKGFAGLPSDTPREKLRTLALTKQSVKKVMPVVQEFVKEPPREVTEKD 179
Query: 520 KNFKAYQYLRGARSIAK 570
+ Y LR AR AK
Sbjct: 180 TSVNVYHKLRVARKAAK 196
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 122 bits (295), Expect = 5e-27
Identities = 61/128 (47%), Positives = 78/128 (60%)
Frame = +1
Query: 19 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 198
NN IPN H K W VKT+F+ PAR RR+ R LRP+VRCPTVR
Sbjct: 26 NNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIVRCPTVR 85
Query: 199 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 378
Y+ K R GRGFT +E+ A+G +P+ AR GIAVD RR + ++ NV+RL+ Y+ARLI
Sbjct: 86 YNMKTRLGRGFTPKELVAAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLI 145
Query: 379 LFPKGKKV 402
KG+ V
Sbjct: 146 KVKKGETV 153
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 116 bits (280), Expect = 4e-25
Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Frame = +1
Query: 19 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 198
NN++PN H HK WQR+V+ FN+ +R +R+ R L PVV CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 199 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 378
Y+ K R G+GFTL EI+A L PS AR+IGI VD RR+N+ ESL+ N +RL++Y L+
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLV 123
Query: 379 LFP----KGKKVLKG---EANE---EERKLATQLRGPLMPVQQTAPKSVARPITEDEKNF 528
+ P K K + G +A + E+ K QLR P ++ +++
Sbjct: 124 MIPLKKDKPKNGIGGIPADATKEVIEQHKERKQLRSIFKKGSSVKPFYETIETSKIDQSS 183
Query: 529 KAYQYLRGARSIAKLVGIRAKRLKDAAENPDD 624
AY+ LR A+ +A+ R ++ KD D
Sbjct: 184 SAYKTLRKAK-LAERRKNRQQQRKDIKRKSKD 214
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 103 bits (246), Expect = 5e-21
Identities = 54/121 (44%), Positives = 71/121 (58%)
Frame = +1
Query: 43 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 222
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 223 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKV 402
RGF+L+E+RA+ ++ + ARTIGIAVDPRR+ S E L N QRL EY RL L K+
Sbjct: 71 RGFSLKELRAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKI 130
Query: 403 L 405
+
Sbjct: 131 V 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 93.5 bits (222), Expect = 4e-18
Identities = 42/90 (46%), Positives = 63/90 (70%)
Frame = +1
Query: 166 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 345
+RP+VRCPTVRYHTKVR GRGF+L EIR +G++ ARTI I+VDP+++ K E +
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKKKKKKKERKKEKN 72
Query: 346 QRLKEYRARLILFPKGKKVLKGEANEEERK 435
+R+ E + I++PK +K + + +E +K
Sbjct: 73 ERVTETNQKDIIYPKREKEREKKGMKEGKK 102
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 88.2 bits (209), Expect = 1e-16
Identities = 57/169 (33%), Positives = 83/169 (49%)
Frame = +1
Query: 13 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
KGN+ +PN HF K + + P + R + LRP+VRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
++Y+ R GRGFT E +GL+ AR +GIAVD RRR+ + E+ NV+R+K Y +
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGK 119
Query: 373 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 519
+ ++ K EA E K T+ +MP PK V I+ +E
Sbjct: 120 ITIYESVK-----EARESGAKPYTK---EIMPF--VKPKPVVGSISREE 158
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +1
Query: 37 GHFHKDWQRFVKTWFNQPARR-HRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 213
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 214 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSV 324
+ GRGF+++EI+ S + A + GI++D RR+ ++
Sbjct: 70 KLGRGFSIQEIKKSMIKLKTATSYGISIDKRRKKSNI 106
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 58.8 bits (136), Expect = 1e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +1
Query: 28 IPNGHFHKDWQRFVKTWFNQPARRHRRK 111
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 53.2 bits (122), Expect = 5e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +1
Query: 19 NNMIPNGHFHKDWQRFVKTWFNQPARRHRR 108
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein
L13e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 86
Score = 46.4 bits (105), Expect = 6e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +1
Query: 172 PVVRCPTVRYH----TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQI 339
P+VR P +R H +R GRGF+ +E+ A GL+ A+ +G+ +D RRR +
Sbjct: 10 PIVRKPMLRKHGGLSPGLRVGRGFSKKELEAVGLDLKTAKKLGLRIDKRRRTIH----EW 65
Query: 340 NVQRLKEYRARL 375
NVQ L++Y ++
Sbjct: 66 NVQALRDYLTKI 77
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 45.2 bits (102), Expect = 0.001
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +1
Query: 211 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNK---SVESLQINVQRLKE 360
VR GRGF+L E+ +GL+ AR +G+ VD RRR +VE+L+ ++RL+E
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLRE 75
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 43.6 bits (98), Expect = 0.004
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +1
Query: 208 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 378
K++ GRGF++ EI+A L + AR +GI VD RR++ + + NV+ L+EY ++++
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTRRKS----TWEWNVKALQEYVSKVV 69
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 42.7 bits (96), Expect = 0.007
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Frame = +1
Query: 169 RPVVRCPTVRYH---TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRN---KSVES 330
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD RR +++E+
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERRETSWPQNIEA 65
Query: 331 LQINVQRLKEYRAR 372
L+ + L E RA+
Sbjct: 66 LRKWLIDLLEGRAQ 79
>UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1;
Sulfolobus tokodaii|Rep: 50S ribosomal protein L13e -
Sulfolobus tokodaii
Length = 77
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +1
Query: 166 LRPVVRCPTVRYHTK---VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQ 336
+ P+V+ P R+ + + G+GF+L+E++ SG + A+ + + +D RR+ E+++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 337 INVQRLKE 360
+ +++LKE
Sbjct: 62 V-LKKLKE 68
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 41.5 bits (93), Expect = 0.016
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +1
Query: 214 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARL 375
R GRGF++ E+ +GLN + AR +GI VD RR KSV + NV+ LK++ +L
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRR--KSVH--EENVETLKKFSEQL 74
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 40.7 bits (91), Expect = 0.028
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +1
Query: 211 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRN---KSVESLQINVQRLKEY 363
++ GRGF+ E++A GL AR +GI VD RR+ ++VE+L+ ++ LKE+
Sbjct: 30 LKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKTVHPENVEALRSWLKALKEH 83
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.1 bits (87), Expect = 0.086
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 166 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGL 261
LRPVV T++Y+ KV +GFTL E++A+G+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.11
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 172 PVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSF 273
P+V+C T++Y+ K RAGRGF L E++ F
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELKVLSSRSGF 80
>UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 365
Score = 36.7 bits (81), Expect = 0.46
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 385 PKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
PKGKK K A EEE +A Q+ P+ PV K V ++E++K YQ L+
Sbjct: 297 PKGKKQKKKSAVEEEGSVAPQVAQPVKPVH--IDKFVRPTVSENKKPSSRYQILQ 349
>UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L13E - Ignicoccus hospitalis KIN4/I
Length = 96
Score = 36.3 bits (80), Expect = 0.61
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +1
Query: 166 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 345
L PV+R + K+R GRGF+ E+ A GL+ A +GI +D RR K+V + NV
Sbjct: 29 LTPVLRKDAGK-KPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRR--KTVH--EWNV 83
Query: 346 QRLKEY 363
+ LK++
Sbjct: 84 EALKKW 89
>UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3;
Bacillus|Rep: Polyketide synthase type I - Bacillus
amyloliquefaciens
Length = 1917
Score = 35.5 bits (78), Expect = 1.1
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 340 NVQRLKEYRARLILF-----PKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARP 504
N +RLKEY ARL++F P+G L + + + +L LRG L V A SV
Sbjct: 895 NPERLKEYAARLLMFLKDEAPEGSGPLYDKIDTMQNQLEDALRGVLAEVLHVASGSV--- 951
Query: 505 ITEDEKNFKAY 537
+DE+++K +
Sbjct: 952 --DDEQDWKEF 960
>UniRef50_Q01GC3 Cluster: Predicted E3 ubiquitin ligase; n=1;
Ostreococcus tauri|Rep: Predicted E3 ubiquitin ligase -
Ostreococcus tauri
Length = 355
Score = 35.5 bits (78), Expect = 1.1
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +1
Query: 190 TVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRA 369
T R + + GR L I A +N AR +G R R + +N R E
Sbjct: 247 TTRVNAIIEYGRVPDLAAI-AREVNREEARKVGAGAKARIRAITATPSSLNSSRRFEIEV 305
Query: 370 RLILFPKGKKVLKGEANEEERKLATQL-RGPLMPVQQTAPKSVARPITEDEK 522
R + P G+ + +EEE + L ++P+ Q AP+ V P +DE+
Sbjct: 306 RRVRPPAGRTMDNHHDDEEEAEEERSLSEDEILPLSQAAPRYV--PTDDDEE 355
>UniRef50_Q8W9S9 Cluster: Ribosomal protein L5; n=1; Mesostigma
viride|Rep: Ribosomal protein L5 - Mesostigma viride
Length = 175
Score = 34.3 bits (75), Expect = 2.4
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 498 SNRFWCCLLYWHQGTT--QLSSQFALFFISFTLQYLLALREKNKTSSIFLQPLNINL 334
+ +F+ +W QG +L +F LF SF Q L EK S IFL LNI L
Sbjct: 119 TKQFFGYSFFWEQGLLFPELEDRFELFKSSFEFQ-LFVKAEKKNNSDIFLTALNIPL 174
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 33.5 bits (73), Expect = 4.3
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 295 VDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEA---NEEERKLATQLRGPLM 465
+D R+ S+ SLQ + ++E +L+LFP+G + K + +A Q + P+
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ 200
Query: 466 PV 471
PV
Sbjct: 201 PV 202
>UniRef50_Q752I3 Cluster: AFR592Wp; n=2; Saccharomycetaceae|Rep:
AFR592Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 319
Score = 33.5 bits (73), Expect = 4.3
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 289 IAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERK-----LATQLR 453
+ +D R+KS++SL +++RLK R +FP+G + E K LA Q +
Sbjct: 162 VFLDRSNRSKSLKSLNASLERLKRNRQAAWIFPEGTRSYTTEMQLLPFKKGAFHLAQQAQ 221
Query: 454 GPLMPVQQTAPKSVARP 504
P++PV +V P
Sbjct: 222 IPVIPVVMCNTSTVFNP 238
>UniRef50_Q9KD05 Cluster: BH1414 protein; n=1; Bacillus
halodurans|Rep: BH1414 protein - Bacillus halodurans
Length = 219
Score = 33.1 bits (72), Expect = 5.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 359 NIELVLFFSRRARRY*RVKLMKKSANWLLSCVVP*CQY 472
++ +LF RRA RY + L + + NWL+ V P C Y
Sbjct: 116 DVTSLLFDGRRANRYVDIHLPEMTNNWLIEHVEPNCTY 153
>UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putative;
n=6; Plasmodium|Rep: Nucleolar GTP-binding protein 1,
putative - Plasmodium chabaudi
Length = 682
Score = 33.1 bits (72), Expect = 5.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 298 DPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEAN 420
DP R+ + +S +QR K Y+ ++ + + KK KGEA+
Sbjct: 618 DPTRKMRIYQSTSTEIQRKKAYKLNIVAYRQIKKGTKGEAD 658
>UniRef50_A6RLJ5 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 459
Score = 33.1 bits (72), Expect = 5.7
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +1
Query: 208 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQ----RLKEYRARL 375
K+R G G NPS AR AV KS++S QI Q LKE+R+R+
Sbjct: 200 KLRHGLGIASITSSTLYTNPSIARLASTAVKILTDEKSIDSQQITGQLRDSMLKEFRSRI 259
Query: 376 --ILFPKGKKVLKGEANEE 426
+L P K + N E
Sbjct: 260 DSLLLPSPTSHRKVDTNHE 278
>UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner
membrane subunit; n=8; Burkholderiales|Rep: Polar amino
acid ABC transporter, inner membrane subunit -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 260
Score = 32.7 bits (71), Expect = 7.5
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = -3
Query: 111 LSTMTTSWLIKPCLHKSLPILMEMAIWYHIIP 16
L ++T+W+ L +++PIL+++ +WYH+IP
Sbjct: 79 LVRLSTTWVE---LFRNIPILVQVFLWYHVIP 107
>UniRef50_Q2PZW7 Cluster: Major capsid protein; n=1; Lymphocystis
disease virus strain Huangdao|Rep: Major capsid protein
- Lymphocystis disease virus strain Huangdao
Length = 115
Score = 32.3 bits (70), Expect = 9.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 418 NEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNF 528
NEE R + T R L+ QTAPK V P+T NF
Sbjct: 17 NEERRLMGTVPRDILVEQVQTAPKHVFEPLTIPSPNF 53
>UniRef50_A0DQB8 Cluster: Chromosome undetermined scaffold_6, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_6,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 927
Score = 32.3 bits (70), Expect = 9.9
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 310 RNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKL 438
RNK V +Q + Q L E + R+ + ++LK E+ E+ER L
Sbjct: 497 RNKYVNMIQNSSQDLAELKERIKILQNELEILKNESQEKERTL 539
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,336,618
Number of Sequences: 1657284
Number of extensions: 11318054
Number of successful extensions: 30948
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 30177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30923
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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