Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F22
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 181 7e-47
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.2
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 27 2.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 6.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.0
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.0
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 9.0
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 181 bits (441), Expect = 7e-47
Identities = 95/199 (47%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Frame = +1
Query: 28 IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 207
+PN HFHKDWQR+VKTWFNQP R+ RR+Q R +RP V+ PT+RY+
Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67
Query: 208 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 387
KVRAGRGFTL E++A+G++ A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127
Query: 388 -KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSI 564
K + KG+A + T + ++P+ Q A + A+PITE+ KNF A+ L R+
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAY 185
Query: 565 AKLVGIRAKRLKDAAENPD 621
A+ G RA K AE +
Sbjct: 186 ARYAGARAAFQKKRAEEAE 204
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 406 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 519
+ E N ++ + TQ + PV+++ PK + P+T E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 129 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 7
L S+ L +T +WL++ +S P + +A W I FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 523 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 615
N ++ ++LR A S A++VG +R++ EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 445 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
Q P+ PVQ P A+P ED + + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 262 NPSFARTIGIAVDPRRRNKSVESLQINV 345
NPS A +A D ++S+ES NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 359 NIELVLFFSRRARRY*RVKLMKKSANWLL 445
N+E+ + F+ R+ R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 527 SKLINTLEELVLLPNLWA 580
SKLI TL+E VL+ LWA
Sbjct: 254 SKLIYTLDEDVLVDALWA 271
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 484 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE 612
P P E+E +YL +S AK VG ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,838
Number of Sequences: 5004
Number of extensions: 47897
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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