Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F22
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   194   4e-50
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    93   1e-19
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    31   0.68 
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  194 bits (473), Expect = 4e-50
 Identities = 95/201 (47%), Positives = 131/201 (65%), Gaps = 1/201 (0%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 193 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 372
            RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N  RLKEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 373 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
           LILFP K     KG+++ EE K+A QLRG ++P+  T      R +T+ E+  + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183

Query: 550 GARSIAKLVGIRAKRLKDAAE 612
             R+  K  G R KR ++AAE
Sbjct: 184 KERADKKYRGKREKRAREAAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 192
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 193 VRYHTKVRAGRGFTLREIRASGLN 264
            RY+TK R GRGF+L+E++A+  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 376  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 531
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 376  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 531
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 376  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 531
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 385 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARS 561
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 562 IAKLVGIRAKRLKDAAENPD 621
             K  G + K  K   + PD
Sbjct: 103 SKKATGSKKKNKK--TKKPD 120


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 606 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 427
           ++ + L  D H      +SS + I    +LIL + S N     +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289

Query: 426 FFI 418
            F+
Sbjct: 290 TFV 292


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 606 RILQSLGSDAHKFGNRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLSSQFAL 427
           ++ + L  D H      +SS + I    +LIL + S N     +LY +QG T ++ +F L
Sbjct: 231 KVCKKLEFDLHLIACFFASSVMFIYIANILILME-SENIEDKEILYGYQGLTSIAGKFVL 289

Query: 426 FFI 418
            F+
Sbjct: 290 TFV 292


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 114 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 25
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 114 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 25
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 CSLPYCALSYKSSCRQRIYPT 239
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,887
Number of Sequences: 27780
Number of extensions: 267982
Number of successful extensions: 689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)