Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F21
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.2  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   4.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.3  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    24   9.7  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    24   9.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   9.7  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    24   9.7  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 319 VLDGFTSER-TRSVTTGKSIGDQASSGHYNNKEAT 420
           VLD   S   T+S  TGKS   QA S H  +K  T
Sbjct: 447 VLDDHKSRNLTKSEKTGKSNSQQAPSNHVLSKSNT 481


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 209 SMHGDDAKFTRQSYG*FEILGHRDEFRRR 295
           S   DD ++ R+S G ++   +RD++R R
Sbjct: 340 SSRSDDREYHRRSDGRYDRSNYRDDYRHR 368


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 327 IQNLRKLSRCHLRRNSSRCPNISNYP 250
           + NL   S+  LRR  SR P  SN P
Sbjct: 283 VDNLADFSQSPLRRGPSRFPTNSNVP 308


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 361 TGKSIGDQASSGHYNNKEATNQQLEA 438
           T KS+  ++SSG  +  EA+N  LE+
Sbjct: 193 TDKSVHSKSSSGSNSLSEASNDDLES 218


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 207 EACMVTMRSLQDNHMDNLKYWDIGMNFVVGGNGKVYE 317
           E C+  M +L DNH+ N     I +    GG  K Y+
Sbjct: 112 EDCIQFMANLIDNHVKNCNKKKITLIATGGGAYKFYD 148


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 357 NRSCALRREAIQNLRKLSRCHLRRNSSR-CP 268
           +++ A R + +QN   + RCH   N +R CP
Sbjct: 203 DQATAKRLDVMQNSMSVYRCHTIMNCARTCP 233


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 120 LSPVHIEYLPRPISLVIIQHTVTPTCETNEACMVTMRSLQDNHMDNLKYWDI 275
           +SP + + +    SL+II  +   + E  +AC++ +R L+D   +++   DI
Sbjct: 459 VSPSYEDIISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSSESVLLGDI 510


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 148 GKYSICTGDSPPQSFLE 98
           G++ +C GDSP   F E
Sbjct: 170 GRFMVCVGDSPQVFFYE 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,783
Number of Sequences: 5004
Number of extensions: 44349
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)