Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F20
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.42 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.55 
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    29   0.55 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    26   3.9  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   5.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   6.8  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   6.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   9.0  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   9.0  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   9.0  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 86  NCASVTFGVPLTYDEEEMEYRLNQEDLEKMWRTYITRDPFALRLRRMGITEFATPDENSV 265
           + AS    V L + +  ++ R +Q+    MW +Y   +P    L R G    AT ++   
Sbjct: 110 HAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMT 169

Query: 266 MMVWLVIAAGV 298
            + W ++   +
Sbjct: 170 PLHWSIVGGNL 180


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 467 RSQNIAVAESGEVSGRDPALVSPASGYPCHCMLASW 360
           RS++I       +SG+      P SG+P HC    W
Sbjct: 32  RSEHIKQVYRCPISGKSVEYECPESGFPTHCNRTHW 67


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 439 LVRCRVEIQPSFLLLQAIRVTVCLHPGVVF 350
           ++RC  + +P+FLL +A+ +   +HP  +F
Sbjct: 127 MLRCHPDTEPNFLLRKALTLVSKVHPNFLF 156


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = -1

Query: 172 LLKVFLVEAILHLLLVVRQRNTERHRRAVFMIRPVYITE*RACYLRYFVSNIPSRI 5
           LL V L++  L   +++++ N E  + +VF++  V +   +A Y+R   S +P+++
Sbjct: 40  LLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKVPLVFQQAEYIR---SQLPAKV 92


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 118 DVRRGGDGVSPQPGRP*EDV 177
           DVR G DG+  +PG P  D+
Sbjct: 241 DVREGADGIMVKPGTPYLDI 260


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 EDYTRMQAYSDTDSLKQEKRGLDLYP 427
           ED +R    S+T SLK  + GLDL+P
Sbjct: 319 EDLSRDILKSETASLKIPELGLDLFP 344


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 440  ILPPLYSENDYKWADDSTRVDMGGFANRSYVREDMYDFDSEEEVV 574
            +LP L SE D+K   +  R++  G        E   D D  EE++
Sbjct: 944  LLPALLSELDHKLVSEWRRINDRGLLVEEDAEETGEDDDLSEEMI 988


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 DEEEMEYRLNQEDLEKMWRT 184
           D E++EY    E++EK W T
Sbjct: 6   DLEQLEYEKEVEEIEKWWAT 25


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 437  QILPPLYSENDYKWADDSTRVDMGGFANRSYVREDMYDFDSEEEVVPARDRF 592
            +I+  +++E+D    DD+   D     N+S +  D    D  E  +P +++F
Sbjct: 981  EIVQVIHTEDDSLHFDDNVSTDSVSLGNKSRISMDSMRNDC-EAFLPKKEKF 1031


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 417 SSPRFSCFRLSVSLYACILV*SSKQLNLQSAKASMAIDIRTPAAITSHTIITEFSSGVAN 238
           +S RF C   S S Y CI    ++ ++ Q ++     + RT   I     I+ F+ G+  
Sbjct: 531 NSHRFPCIFTSFSCYNCIS--GTRNISRQYSRDKFHYNQRT--TIYYLVAISIFALGLTY 586

Query: 237 SVIPILR 217
           + +P+ R
Sbjct: 587 AAVPLYR 593


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 398 ASGYPCHCMLASWCSLQSS*TSK 330
           A  YP  C +A+WC++    T +
Sbjct: 335 AKKYPEQCAMAAWCNMTEKDTER 357


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 342 LNLQSAKASMAIDIRTPAAITSHTII 265
           +N+ S KAS AI + TP  I S   +
Sbjct: 141 VNVPSMKASSAISVETPETIESEASV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,571
Number of Sequences: 5004
Number of extensions: 51965
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)