Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F20
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    35   0.061
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    30   1.7  
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893...    29   4.0  
02_05_0730 + 31284936-31285085,31285228-31285452,31287058-312872...    28   7.0  
09_04_0347 + 16887182-16888504                                         27   9.3  
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    27   9.3  

>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 34.7 bits (76), Expect = 0.061
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 224 MGITEFATPDENSVMMVWLVIAAGVLISMAMLA--FALWRFSCFEDYTRMQAYSDT 385
           MG+  FA  DE  +M+VW  +A  VL   A+ A  +A WR    E   R Q    T
Sbjct: 1   MGMVVFAAGDERPLMLVWAAVAGAVLAWCAVRAMEWAWWRPRRLERALRAQGLRGT 56


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +2

Query: 56  LCNINW----PDHENCASVTFGVPLTYDEEEMEYRLNQEDLEKMWRTY-ITRDPFALRLR 220
           LC++ W    PD E       GV  T+  +++   L + DL+ + R + +  D +    +
Sbjct: 199 LCDLVWSDPSPDSEGWGESDRGVSCTFGADKLVEFLEKNDLDLICRAHQVVEDGYEFFAQ 258

Query: 221 RMGITEFATPD 253
           R  +T F+ P+
Sbjct: 259 RRLVTIFSAPN 269


>03_02_0502 -
           8934646-8934834,8934974-8935121,8935228-8935304,
           8935427-8935497,8935594-8935680,8935852-8936316,
           8936406-8936880
          Length = 503

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 257 NSVMMVWLVIAAGVL-ISMAMLAFALWRFSCFEDYTRMQAYSDTDSLKQEKRGLDLYPTP 433
           +S  +VW+++AAGV+   +A+    LW   C     R Q        ++ +R    +P P
Sbjct: 101 SSTAVVWIIVAAGVVGAVLALCVLTLWIRRC-----RRQ--------RRRRRQAQPFPLP 147

Query: 434 HQILPPLYSENDYKWAD 484
               PP+Y+ N Y   D
Sbjct: 148 ----PPIYNPNPYYKGD 160


>02_05_0730 +
           31284936-31285085,31285228-31285452,31287058-31287252,
           31287357-31287418,31287768-31288032
          Length = 298

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 223 PTQPQRERISRDVRPPHLLKVFLVEAILHLLLV 125
           PT    E+   D  PPHLLK  + E +   LLV
Sbjct: 30  PTMYYGEKAIADFFPPHLLKKVVSEVVATFLLV 62


>09_04_0347 + 16887182-16888504
          Length = 440

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 404 KRGLDLYPTPHQILPPLYSENDYKWADDSTRVDMGGF----ANRSYVREDMYDFDSEEEV 571
           K G +++PTPH     +Y      W   ST  + GG     A+     E+ Y  +S++++
Sbjct: 264 KTGKEVFPTPHD--HNIYQLAKKVWGTMSTAGEGGGSGYDNADAGESEEEQYGRESDDDM 321

Query: 572 VPARD 586
              RD
Sbjct: 322 ESGRD 326


>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 29  EITQITSASLCNINWPDHENCASVTFGVPLTYDEEEMEYRLNQEDLEKMWRTYITRDPFA 208
           E+ Q + A++CN++WP       V     L   ++ +   L +E++EK WR    R  + 
Sbjct: 241 EVYQQSIAAVCNLDWPRSNILVQV-----LDDSDDPITQSLIKEEVEK-WRQNGARIVYR 294

Query: 209 LRLRRMG 229
            R+ R G
Sbjct: 295 HRVLREG 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,118,390
Number of Sequences: 37544
Number of extensions: 390843
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)