Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F18
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    91   8e-20
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    45   7e-06
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      31   0.15 
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.1  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    27   1.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.8  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   7.6  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 91.5 bits (217), Expect = 8e-20
 Identities = 45/111 (40%), Positives = 64/111 (57%)
 Frame = +1

Query: 10  FAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLPVAVSLIICRVIXXXXXXXX 189
           F  V  ++W G AV +LN KLLG NIS FQS+C+LGY   P+ ++ I+C  +        
Sbjct: 120 FTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFV-----PLI 174

Query: 190 XXXXXXVISMVGFMWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLV 342
                 +++M  + W  FAA   L +S    KK LAVYP+ LFYF L+W++
Sbjct: 175 FIRIPVIVAM--YAWTLFAAMGVLQNSNLSNKKLLAVYPLFLFYFSLAWII 223


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
 Frame = +1

Query: 10  FAEVFVIVWIGAAVVTLNSKLLGG-NISFFQSVCVLGYCLLPVAVSLIICRVIXXXXXXX 186
           F  ++ I  +G+  +    +L+   N+ F ++V VLGY LLP+ V      +        
Sbjct: 117 FGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAG 176

Query: 187 XXXXXXXVISMVGFMWATFAATK-FLGDSQPEGKKALAVYPICLFYFILSWLVV 345
                   ++ +  +W T+AA+  F+G  Q    + L  YPI LFY + + + V
Sbjct: 177 YA------LAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITV 224


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 457 YNRSYCDV*NGFSLYRNFMTRNKVWFCN 540
           + +S+  V    SLYR F+TR K+ +CN
Sbjct: 592 FQKSHLSVIKAQSLYRGFITRTKIDYCN 619


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 362 RYNCIYLL*YGRTYLVFLMCILLY 433
           R+  +Y L YGR + +F++C+ L+
Sbjct: 220 RFRFLYALGYGRLFGIFVLCVSLF 243


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 507 VSVQRKSISHVTVTAIVLKIKTHLKYNNMHIKNTKYV 397
           + ++  +I H T+T++ +++ THLK   M +K  + V
Sbjct: 17  IELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPV 53


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 173 LNRITRQMIRETATGRRQYPNTQTDWKNEML-PPSSLEFKVTTAAPIH 33
           +N+ +    RE  T    + NT+ D  + ML PPSS  F    ++ +H
Sbjct: 66  VNKNSSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLH 113


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 226 FMWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSH 351
           ++W TF + K +G  + E   A +  PI      ++W++  +
Sbjct: 155 YLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITEN 196


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 161 TRQMIRETATGRRQYPNTQTDWKNEMLPPSSLEFKVTTAAPIHTITNTS 15
           T ++ +E   G    PN+     + +L P+S  F   T +   T T+TS
Sbjct: 599 TLELPKEMVLGIYSEPNSDLTNSSTLLSPTSTSFTSYTVSATATPTSTS 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,718
Number of Sequences: 5004
Number of extensions: 49981
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)