Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F18
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 79 3e-15
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 79 3e-15
03_02_0634 + 9986742-9987512 34 0.089
09_04_0292 - 16436918-16439233 32 0.36
01_01_0286 - 2368529-2369022,2369074-2369324,2369553-2370014,237... 29 2.5
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 29 3.4
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 28 5.9
11_06_0647 + 25870470-25870744,25870765-25871533 27 7.7
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 78.6 bits (185), Expect = 3e-15
Identities = 40/113 (35%), Positives = 65/113 (57%)
Frame = +1
Query: 10 FAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLPVAVSLIICRVIXXXXXXXX 189
FA F ++ GA ++TLN LLGG I+FFQS+ +LGYCL P+ V +IC +
Sbjct: 182 FAVAFAVLAAGAIILTLNVLLLGGRINFFQSLSLLGYCLFPLDVGALICML-------KD 234
Query: 190 XXXXXXVISMVGFMWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVS 348
+ +V W+++AA F+ + +KALA+YP+ L Y + +L+++
Sbjct: 235 NVLLKIIAVVVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 78.6 bits (185), Expect = 3e-15
Identities = 39/113 (34%), Positives = 65/113 (57%)
Frame = +1
Query: 10 FAEVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLLPVAVSLIICRVIXXXXXXXX 189
FA F ++ GA ++TLN LLGG+I FFQS+ +LGYCL P+ V ++C +
Sbjct: 165 FAVAFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCML-------KD 217
Query: 190 XXXXXXVISMVGFMWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVS 348
++ V W+++AA F+ + +KALA+YP+ L Y + +L+++
Sbjct: 218 NVILKIIVVTVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVGFLIIA 270
>03_02_0634 + 9986742-9987512
Length = 256
Score = 33.9 bits (74), Expect = 0.089
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +1
Query: 79 GNISFFQSVCVLGYCLLPVAVSLIICRVIXXXXXXXXXXXXXXVISMVGFMWATFAATKF 258
G++ ++ V ++GYC+LP+ + I + + M +W+T T+
Sbjct: 171 GDLDLYRCVSLVGYCMLPMVIFSAISLFLPRGGGLIFG------VGMGFVLWSTRVCTRL 224
Query: 259 LGD--SQPEGKKALAVYPICLFYFILSWLVV 345
L + S + + L Y L Y + S LVV
Sbjct: 225 LAELASSGDEHRGLIAYACWLVYMLFSLLVV 255
>09_04_0292 - 16436918-16439233
Length = 771
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 287 RHSLFTQYACFISYCLGSSSPIVTFRYNCIY----LL*YGRTYLVFLMCILLYFKWVLIF 454
R+ LF +ACF+ LGS+ + F +N + ++++L+ ++LY+K L
Sbjct: 85 RNELFVVWACFLLLLLGSADAMTAFSFNDTQQHARSMMNQALHIIYLLFLILYYKAQLRM 144
Query: 455 N 457
N
Sbjct: 145 N 145
>01_01_0286 -
2368529-2369022,2369074-2369324,2369553-2370014,
2370090-2370316
Length = 477
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 287 RHSLFTQYACFISYCLGSSSPIVTFRYN----CIYLL*YGRTYLVFLMCILLYFK 439
++ LF +ACF+ LGS+ + F +N + ++V+L+ ++LY+K
Sbjct: 7 QNELFVVWACFLLLLLGSADTMTAFSFNDSSQQTRSMMNQTLHVVYLLFLILYYK 61
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 236 LLLPRRNSSATVNPRVKRHSLFTQYAC 316
+L R SS T +PR+ L+TQY C
Sbjct: 384 ILASRDGSSVTGSPRMSSRELWTQYVC 410
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 266 TVNPRVKRHSLFTQYACFISYCLGSSS 346
+++ +K H++ YACF+ + LGS S
Sbjct: 490 SLDDSLKAHTISAAYACFLDHVLGSLS 516
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 207 EPQEEKECCLSTE*NNAADDQRNSHRQE 124
E E++E C E N DD+ S RQE
Sbjct: 226 EEDEKREECAEEEGENTQDDKEESERQE 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,331
Number of Sequences: 37544
Number of extensions: 309399
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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